Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq899 150 4e-31
seq6889 141 2e-28
seq3764 125 2e-23
seq12661 109 1e-18
seq11974 105 1e-17
seq9853 104 5e-17
seq8560 104 5e-17
seq711 93.3 9e-14
>seq899
Length=2520420
Score = 150 bits (166), Expect = 4e-31
Identities = 169/225 (75%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | | || ||||| |||||||||||||| || || ||||| || | || ||
Sbjct 2264635 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 2264694
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| ||||| || || || ||||| || | || |||||||| || |||||
Sbjct 2264695 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 2264754
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||||||||| || || |||||||||||| |||||||| ||| ||||| ||
Sbjct 2264755 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 2264811
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || ||||| || || ||||| | |||||
Sbjct 2264812 CAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 150 bits (166), Expect = 4e-31
Identities = 169/225 (75%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | | || ||||| |||||||||||||| || || ||||| || | || ||
Sbjct 2264863 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 2264922
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| ||||| || || || ||||| || | || |||||||| || |||||
Sbjct 2264923 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 2264982
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||||||||| || || |||||||||||| |||||||| ||| ||||| ||
Sbjct 2264983 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 2265039
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || ||||| || || ||||| | |||||
Sbjct 2265040 CAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 145 bits (160), Expect = 2e-29
Identities = 157/207 (76%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||||||||||| || || ||||| || | || || | ||||||||| |||||
Sbjct 2264425 GTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 2264484
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || || ||||| || | || |||||||| || ||||| ||||||||||| || ||
Sbjct 2264485 TTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTT 2264544
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
|||||||||||| |||||||| ||| ||||| || ||||| | ||||| ||
Sbjct 2264545 GGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 2264601
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || ||||| | |||||
Sbjct 2264602 CGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 141 bits (156), Expect = 2e-28
Identities = 167/225 (74%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | | || ||||| |||||||||||||| || || ||||| || | || ||
Sbjct 2265091 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 2265150
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| ||||| || || || ||||| || | || |||||||| || |||||
Sbjct 2265151 GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 2265210
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||||||||| || || |||||||||||| |||||||| ||| ||||| ||
Sbjct 2265211 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 2265267
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| | ||||| || ||||| || || ||||| | |||||
Sbjct 2265268 CAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 138 bits (152), Expect = 3e-27
Identities = 167/226 (74%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | | || ||||| |||||||||||||| || || ||||| || | || ||
Sbjct 2265319 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 2265378
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| ||||| || || || ||||| | | ||||||||||| || |||||
Sbjct 2265379 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCC 2265438
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095
|||||| ||||| || || |||||| ||||| |||||||| |||| ||||| ||
Sbjct 2265439 TTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTC---ACTTGGCTCCACCTC 2265495
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| |||| || || || || | || ||||| || | ||||||
Sbjct 2265496 CAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
>seq6889
Length=11136585
Score = 141 bits (156), Expect = 2e-28
Identities = 161/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||| || || ||||| || || || |||||||| | |||||| | ||||||||
Sbjct 1034254 AACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1034313
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 1034314 CAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTG 1034373
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107
|| || ||| || ||||| |||||||| ||| ||||| || ||||| | ||
Sbjct 1034374 GATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGT 1034430
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| || |||| ||||| ||||| | ||||||||
Sbjct 1034431 CTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTT 1034465
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | | ||||||
Sbjct 1034027 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCC 1034086
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 1034087 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034146
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| |||||||| |||||||| ||| || || || ||||| | |||
Sbjct 1034147 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTC 1034203
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || ||||| | |||||
Sbjct 1034204 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| ||||| |||||||| | |||||| | ||||||||
Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| |||||||| ||||||| ||| || | || ||||| | | |
Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTC---ACTGGGCTCTTCCTCCAGGGTGATGGCC 1033975
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || ||||| | |||||
Sbjct 1033976 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq3764
Length=1885950
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| |||||||| ||||| || | | ||| |
Sbjct 1780309 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 1780250
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || | ||||| |||| ||| ||||| |||||||| |||||
Sbjct 1780249 CCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 1780190
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || | || || ||||| || || ||||| ||
Sbjct 1780189 TTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 1780130
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
| ||||| || ||| || || |||||
Sbjct 1780129 ATGGTCTTCCCCCTCAGGGTCTTCACGAA 1780101
>seq12661
Length=3984070
Score = 109 bits (120), Expect = 1e-18
Identities = 152/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || |||||||| || | | ||| ||||| ||
Sbjct 2676663 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTCC 2676604
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| || | || ||||| || || ||||| || ||||||||
Sbjct 2676603 AGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 2676544
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||||| |||||| | ||||| ||| || || |||||||| | |||
Sbjct 2676543 ATTTTGGCTTTGACATTCTCAGTAGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTC 2676487
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 2676486 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq11974
Length=740964
Score = 105 bits (116), Expect = 1e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| | ||| | |||||||||||| |||||||| ||||| || | | ||| |
Sbjct 250281 AGTCTCAACAAAAGATCAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 250222
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||||| || ||||| || || ||||| |||| ||| ||||| |||||| |||||
Sbjct 250221 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCC 250162
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| | || | || ||| || || || |||| ||| | || || ||| | ||
Sbjct 250161 TTACCCTGGACCTTGACCTTTACATTTTCTATGGGATCCAAGGGCTCGACCTCAGGAGTG 250102
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || ||||| | |||||
Sbjct 250101 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 250064
>seq9853
Length=4041771
Score = 104 bits (114), Expect = 5e-17
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||| ||||||| || |||||||| || | ||||| | ||||| |
Sbjct 359801 ACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTGC 359860
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || | |||||| || || || |||||||| || ||||| || | ||||||
Sbjct 359861 AGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGG 359920
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||||| | ||||||||||| ||| || || ||||| || | |||
Sbjct 359921 ATTTTGGCTTTGACACTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 359977
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||| || || || || | |||||
Sbjct 359978 TTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq8560
Length=3069389
Score = 104 bits (114), Expect = 5e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || | |||||||||||||| |||||||| ||||| || | | ||| |
Sbjct 2390292 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 2390233
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| | ||||| || || ||||| |||| ||| | ||| |||||||| |||||
Sbjct 2390232 CCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCT-GTCAGGAGGAATTCCTTCC 2390174
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || | | || | || || || || || || || | || ||
Sbjct 2390173 TTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTG 2390114
Query 195103 ACCGTCTTTCCTGTCAA-AGTTTTTACGAACACTTGCAT 195140
| ||||| |||||||| ||| || || || | |||||
Sbjct 2390113 ATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075
>seq711
Length=9888423
Score = 93.3 bits (102), Expect = 9e-14
Identities = 116/158 (73%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983
|||||| ||||| |||||||||||||| |||||||| ||||| | || | || | |
Sbjct 1101996 GTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAG-ACATC 1101938
Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043
||||||| || ||||| || || ||| |||| ||| ||||| ||||||| ||||| |
Sbjct 1101937 CATCTTCCAGTTGCTTGCCAGCAGCGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCT 1101878
Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081
| | || || || ||| || || || || || |||
Sbjct 1101877 TATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCC 1101840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109267532806253
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