Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq899 140 2e-28
seq9853 102 5e-17
seq12661 100 2e-16
seq6889 95.1 8e-15
seq8560 82.4 5e-11
>seq899
Length=2520420
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | || |||||||| | ||| |||||||| ||||| ||||| ||
Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| ||||||||||| |||||||| || || | ||||||||| | ||
Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||| ||||| ||||| |||||| | || | |||| || ||| ||
Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264581
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | ||| ||||| || ||||| | |||||||| |||||||||||
Sbjct 2264582 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || ||| | ||| |||| |||
Sbjct 2265104 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 2265163
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 2265164 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2265223
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 2265224 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 2265283
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 2265284 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 2264648 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2264707
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 2264708 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2264767
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 2264768 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2264827
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 2264828 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 2264876 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2264935
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || || | ||||||||| | || | ||||| |||||
Sbjct 2264936 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 2264995
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 2264996 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2265055
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 2265056 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 105 bits (116), Expect = 4e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 2265332 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2265391
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || | | || |||||| | || | || || || ||
Sbjct 2265392 AGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGT 2265451
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|||||| ||||| || || || | |||| | ||| || || | || |||||||
Sbjct 2265452 ATCTTCACCTTGAC--ATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTT 2265509
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| ||||| ||||||||||||||
Sbjct 2265510 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
>seq9853
Length=4041771
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| || || ||||| || || | || |||| | |
Sbjct 359801 ACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTGC 359860
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||| || || || || ||||||||| | || | ||||||| |||
Sbjct 359861 AGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGG 359920
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || |||||| | | || | |||| || ||| || || | || ||||| ||
Sbjct 359921 ATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 359980
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| | || ||||||||||||||||||||
Sbjct 359981 CCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq12661
Length=3984070
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| || || ||||| || | | | |||| |||
Sbjct 2676663 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTCC 2676604
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || | |||||||| | || | |||||||||||
Sbjct 2676603 AGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 2676544
Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || | | |||| || ||| || || | ||| ||||| |
Sbjct 2676543 ATTTTGGCTTTGAC--ATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 2676486
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || ||||||||||||||||||||
Sbjct 2676485 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq6889
Length=11136585
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| || || ||||| | || ||| |||||||| || ||||||||
Sbjct 1034045 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAG 1034104
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | || ||||| || ||||| || |||
Sbjct 1034105 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1034164
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| || ||| || || | ||| ||||| || || || || ||||||||
Sbjct 1034165 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1034224
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 1034225 AAGATCTGCATA 1034236
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||| || || ||||| | || |||| |||||||| || ||||||||
Sbjct 1033817 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1033876
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | || ||||| || ||||| || |||
Sbjct 1033877 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1033936
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| | | |||| || ||| | || | ||| |||| || || || || ||||||||
Sbjct 1033937 TCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTGCCGGTCAGGGTCTTCACG 1033996
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 1033997 AAGATCTGCATA 1034008
>seq8560
Length=3069389
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
||||| || || |||| ||| || || |||||||| ||||| || | | ||| ||
Sbjct 2390289 CTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 2390230
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| |||| || ||||| ||||| || |||| |||||| || | || | || |||||
Sbjct 2390229 TCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTA 2390171
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
|| ||||| | || | |||| | ||| || ||| || | || || |||
Sbjct 2390170 TCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATG 2390111
Query 34947 GTTTTTCCCGTGA-GAGTCTTCACAAAGATCTGCATATT 34984
|| || || || | ||||||||||||| |||||||| ||
Sbjct 2390110 GTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324574019488152
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