Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015465.1
Length=33004
Score E
Sequences producing significant alignments: (Bits) Value
seq11390 86.0 1e-12
seq11092 84.2 5e-12
>seq11390
Length=17609
Score = 86.0 bits (94), Expect = 1e-12
Identities = 143/207 (69%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 22377 GCGGCTGATGGATTGGCGAATCCACCAGTAGGCATAGGTCGAGAACTTGTAGCCGCGGGA 22436
|||| |||| | ||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 2049 GCGGGTGATCGCCTGGCGGATCCACCAGGTGGCGTAGGTCGAGAACTTGTAGCCGCGGCG 1990
Query 22437 TGGGTCGAAGAGCTCAGTGGCCCGGGCCAGGCCCATGTTGCCATCTTGCACAAGGTCAAG 22496
||||| || |||| |||||| |||||||| || || | ||||| ||
Sbjct 1989 GTACTCGAACTTGTCGACGGCCTTCATCAGGCCGATGTTGCCTTCCTGGATCAGGTCCAG 1930
Query 22497 CATCTCAAGGCTTGTGCAGCGTTTGACGTATTTCTTTGCAATAGTGACCACCAGGCGGAG 22556
| || || || ||| ||| ||||||||| || || | || || ||||| ||
Sbjct 1929 GAACTGCAG------GCCGCGGTTGGTGTATTTCTTGGCGATCGAGATGACGAGGCGCAG 1876
Query 22557 GTTGCGGACGATCATCCGCTCCTTTGC 22583
| || ||| |||| || ||||||
Sbjct 1875 GGTGGCCTCGACCATCTCCTTCTTTGC 1849
>seq11092
Length=17161
Score = 84.2 bits (92), Expect = 5e-12
Identities = 142/204 (70%), Gaps = 10/204 (5%)
Strand=Plus/Minus
Query 22382 TGATGGATTGGCGAATCCACCAGTAGGCATAGGTCGAGAACTTGTAGCCGCGGGATGG-- 22439
|||||| ||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct 6714 TGATGGCCTGGCGGATCCACCACGTGGCATAGGTCGAGAACTTGTAGCCGC--GACGGTA 6657
Query 22440 GTCGAAGAGCTCAGTGGCCCGGGCCAGGCCCATGTTGCCATCTTGCACAAGGTCAAGCAT 22499
||||| || |||| | |||| |||||||| || || | ||||| || |
Sbjct 6656 TTCGAACTTGTCCACGGCCTTCATCCGGCCGATGTTGCCTTCCTGGATCAGGTCCAGGAA 6597
Query 22500 CTCAAGGCTTGTGCAGCGTTTGACGTATTTCTTTGCAATAGTGACCACCAGGCGGAGGTT 22559
|| || || ||| || ||| ||||| || || | || ||||||||| |||||
Sbjct 6596 CTGCAG------GCCGCGGTTCGTGTACTTCTTGGCGATGGAGATCACCAGGCGCAGGTT 6543
Query 22560 GCGGACGATCATCCGCTCCTTTGC 22583
| |||||||| || ||| ||
Sbjct 6542 GGCCTCGATCATCTCCTTCTTGGC 6519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 105472335470228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |