Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015465.1 Length=33004 Score E Sequences producing significant alignments: (Bits) Value seq11390 86.0 1e-12 seq11092 84.2 5e-12 >seq11390 Length=17609 Score = 86.0 bits (94), Expect = 1e-12 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 22377 GCGGCTGATGGATTGGCGAATCCACCAGTAGGCATAGGTCGAGAACTTGTAGCCGCGGGA 22436 |||| |||| | ||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct 2049 GCGGGTGATCGCCTGGCGGATCCACCAGGTGGCGTAGGTCGAGAACTTGTAGCCGCGGCG 1990 Query 22437 TGGGTCGAAGAGCTCAGTGGCCCGGGCCAGGCCCATGTTGCCATCTTGCACAAGGTCAAG 22496 ||||| || |||| |||||| |||||||| || || | ||||| || Sbjct 1989 GTACTCGAACTTGTCGACGGCCTTCATCAGGCCGATGTTGCCTTCCTGGATCAGGTCCAG 1930 Query 22497 CATCTCAAGGCTTGTGCAGCGTTTGACGTATTTCTTTGCAATAGTGACCACCAGGCGGAG 22556 | || || || ||| ||| ||||||||| || || | || || ||||| || Sbjct 1929 GAACTGCAG------GCCGCGGTTGGTGTATTTCTTGGCGATCGAGATGACGAGGCGCAG 1876 Query 22557 GTTGCGGACGATCATCCGCTCCTTTGC 22583 | || ||| |||| || |||||| Sbjct 1875 GGTGGCCTCGACCATCTCCTTCTTTGC 1849 >seq11092 Length=17161 Score = 84.2 bits (92), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 10/204 (5%) Strand=Plus/Minus Query 22382 TGATGGATTGGCGAATCCACCAGTAGGCATAGGTCGAGAACTTGTAGCCGCGGGATGG-- 22439 |||||| ||||| |||||||| |||||||||||||||||||||||||| || || Sbjct 6714 TGATGGCCTGGCGGATCCACCACGTGGCATAGGTCGAGAACTTGTAGCCGC--GACGGTA 6657 Query 22440 GTCGAAGAGCTCAGTGGCCCGGGCCAGGCCCATGTTGCCATCTTGCACAAGGTCAAGCAT 22499 ||||| || |||| | |||| |||||||| || || | ||||| || | Sbjct 6656 TTCGAACTTGTCCACGGCCTTCATCCGGCCGATGTTGCCTTCCTGGATCAGGTCCAGGAA 6597 Query 22500 CTCAAGGCTTGTGCAGCGTTTGACGTATTTCTTTGCAATAGTGACCACCAGGCGGAGGTT 22559 || || || ||| || ||| ||||| || || | || ||||||||| ||||| Sbjct 6596 CTGCAG------GCCGCGGTTCGTGTACTTCTTGGCGATGGAGATCACCAGGCGCAGGTT 6543 Query 22560 GCGGACGATCATCCGCTCCTTTGC 22583 | |||||||| || ||| || Sbjct 6542 GGCCTCGATCATCTCCTTCTTGGC 6519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105472335470228