Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015466.1 Length=62668 Score E Sequences producing significant alignments: (Bits) Value seq9622 98.7 4e-16 seq11367 84.2 9e-12 >seq9622 Length=151425 Score = 98.7 bits (108), Expect = 4e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 58523 GGCGTGAAGCTATCTTACGCCGCGGACTGGTCCGAGTATCATTCCCACCGGCCGAGCGAT 58582 ||||||||||| ||||||||| |||||||| || ||||| |||||||||| ||||| Sbjct 83161 GGCGTGAAGCTCGGTTACGCCGCCGACTGGTCGGAATATCACAGCCACCGGCCGGGCGAT 83102 Query 58583 GGGTCCAATGACGTCTACTTCAATATGGACGCTATTTGGGGGCATGCGGATTGTGACTTC 58642 || || ||||||| |||||| | || | | |||| | || || |||||| Sbjct 83101 GGTTCGGGCGACGTCTTCTTCAACCTCGATCCGCTCTGGGCCGACGCCAATATCGACTTC 83042 Query 58643 GTGGCCATCGACAACTATATGCCTCTCTCCGACTGGAGGGATGGAACGGCTCAT 58696 | | ||||||||| || |||| || || |||||| | || || |||| ||| Sbjct 83041 ATCGGCATCGACAATTACCTGCCCCTGTCGGACTGGCGCGACGGCTCGGCGCAT 82988 >seq11367 Length=141332 Score = 84.2 bits (92), Expect = 9e-12 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 22109 GGCCCCAGACGGTTTCGAT--AGCTTCTGCAGCAC-CGACTTGGAGCAACTTCCTCCGGG 22165 ||||||||||||||||||| || || || || || | | || |||| | || Sbjct 17587 GGCCCCAGACGGTTTCGATGTAGTTTGCGCCGCCTGCGGCATTTGCCAGCTTCTTGCGCA 17528 Query 22166 CTTTGCAGACGAAGACGTCAATGATCTTCAGCTCCGGTTCGTCCCGTCCGCCATAAATCT 22225 ||||||| ||||||||| ||||||||||| ||||| |||||| ||||| |||| | Sbjct 17527 GCTTGCAGATGAAGACGTCGATGATCTTCAGTTCCGGCTCGTCCATGCCGCCGTAAAGGT 17468 Query 22226 CGGTCAGCGCAGCTTCCTTGGTCAGCGTGCCTCCCTTGCG 22265 | |||| ||||||||||||||| |||||||| Sbjct 17467 GGTTCAGGAACATTTCCTTGGTCAGCGTCGTGCCCTTGCG 17428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200376017925671