Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq9573 95.1 1e-14 seq11622 91.5 2e-13 >seq9573 Length=73825 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 149448 TGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAAA 149507 |||||||| ||||||||||||||||| || | ||||||| | |||| ||||||||||||| Sbjct 69103 TGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGTGGTTCAAA 69162 Query 149508 TCCACCTCCCGC 149519 |||| ||||||| Sbjct 69163 TCCAGCTCCCGC 69174 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 149448 TGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAAA 149507 |||||||| ||||||||||||||||| || | ||||||| | |||| || ||||||||| Sbjct 63671 TGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAA 63730 Query 149508 TCCACCTCCCGC 149519 |||| ||||||| Sbjct 63731 TCCAGCTCCCGC 63742 >seq11622 Length=276999 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 149447 TTGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAA 149506 ||||||||| ||||||||||||||||| || | ||||||| | |||| ||| |||||||| Sbjct 87434 TTGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAA 87493 Query 149507 ATCCACCTCCCGC 149519 ||||| ||||||| Sbjct 87494 ATCCAGCTCCCGC 87506 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 149448 TGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAAA 149507 |||||||| ||||||||||||||||| || | ||||||| | |||| ||| ||||||||| Sbjct 87282 TGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAAA 87341 Query 149508 TCCACCTCCCGC 149519 |||| ||||||| Sbjct 87342 TCCAGCTCCCGC 87353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 149448 TGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAAA 149507 |||||||| ||||||||||||||||| || | ||||||| | |||| || ||||||||| Sbjct 87612 TGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAA 87671 Query 149508 TCCACCTCCCGC 149519 |||| ||||||| Sbjct 87672 TCCAGCTCCCGC 87683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571166064885720