Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 439 3e-118
seq7661 120 3e-22
seq608 116 4e-21
seq13960 107 2e-18
>seq8995
Length=8301158
Score = 439 bits (486), Expect = 3e-118
Identities = 664/937 (71%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | ||| ||||||||| || || || ||| |||||||||
Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TTGGATTTGACATCACTCCCATT 6971373
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| |||| ||| ||||| || |||||||| ||||| || ||||| | ||| ||| |
Sbjct 6971374 CTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 6971433
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| ||||| ||||||| ||| || | | || | || || | || | |
Sbjct 6971434 TCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATA 6971493
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|||||||| || || || | || || ||||||| | |||||||| || || |
Sbjct 6971494 AGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 6971553
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908
|| ||||| || || || ||||| || || |||||||| | ||||| | ||| || ||
Sbjct 6971554 TTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATTAT 6971612
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
||||| | || ||| || | || ||||| ||||||| || | |||
Sbjct 6971613 TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAA 6971672
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
||||| || | ||||| ||||| || || | |||||| ||||| || | ||||||||
Sbjct 6971673 GTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 6971732
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|||||||| ||| || | |||||||||||| ||||| || || |||||||| || |||||
Sbjct 6971733 CAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTC 6971792
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
||||| ||||| || || | | ||||||||| |||| || || | | ||||
Sbjct 6971793 CACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCG 6971852
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| |||||||| |||||||| || ||||| ||||| ||||| || | ||| || ||| |
Sbjct 6971853 CAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 6971912
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| || | | |||||||| || | || || | | ||| |||||||| |||||
Sbjct 6971913 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 6971972
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
|| ||||| || || || || || || || ||||| || || || ||||| |||||
Sbjct 6971973 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 6972032
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| ||| | || ||||| |||||||| ||||| |||||||| |||||||| || ||
Sbjct 6972033 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 6972092
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447
| ||||| |||||||| | | || || | | || | | || ||| | | ||| |
Sbjct 6972093 CAGCACATGGGAAATAAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGT 6972151
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
| || || | || || || ||| |||||||||| |||||||| ||||| |||||||| |
Sbjct 6972152 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 6972211
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
||| |||||| | |||| |||||||| || |||||
Sbjct 6972212 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 291 bits (322), Expect = 9e-74
Identities = 426/598 (71%), Gaps = 6/598 (1%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | ||| ||||||||| | || || ||| |||||||||
Sbjct 6968448 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATT 6968505
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| |
Sbjct 6968506 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 6968565
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| ||||| ||||||| ||| || | | || | || || | || | |
Sbjct 6968566 TCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATA 6968625
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|||||||| || || || | || || ||||||| | |||||||| || || |
Sbjct 6968626 AGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 6968685
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908
|| ||||| || || || ||||| || || |||||||| | ||||| | ||| || ||
Sbjct 6968686 TTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATTAT 6968744
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
||||| | || ||| || | || ||||| ||||||| || | |||
Sbjct 6968745 TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAA 6968804
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
||||| || | ||||| ||||| || || | |||||| ||||| || | ||||||||
Sbjct 6968805 GTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 6968864
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|||||||| ||| || | |||||||||||| ||||| || || |||||||| || |||||
Sbjct 6968865 CAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTC 6968924
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
||||| ||||| || || | | ||||||||| |||| || || | | ||||
Sbjct 6968925 CACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCG 6968984
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
|| |||||||| |||||||| || ||||| ||||| ||||| || | ||| || |||
Sbjct 6968985 CAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGA 6969042
>seq7661
Length=1898141
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | |||||||||||||||| ||| |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | |||||||||||| ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 818479 CTACCACACGTTCTCC 818464
>seq608
Length=3558542
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | ||||| ||||| || | |||||||| ||||||||||| |||
Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2088481
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 2088480 ACCACCCTTTCCCC 2088467
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 2098963 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTCC 2098904
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 2098903 ATAAAATCAAAGGGATTTT 2098885
>seq13960
Length=3940437
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || ||||| ||||| ||||| || ||
Sbjct 2049918 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 2049977
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 2049978 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2050037
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 2050038 TTTCTTATACCATA 2050051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562002990044760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |