Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6997 150 1e-30 seq7795 125 6e-23 seq5744 123 2e-22 seq8560 104 2e-16 seq504 102 7e-16 seq90 96.9 3e-14 seq10398 93.3 3e-13 seq6714 91.5 1e-12 seq3764 91.5 1e-12 seq8939 86.0 5e-11 seq899 86.0 5e-11 >seq6997 Length=2532458 Score = 150 bits (166), Expect = 1e-30 Identities = 339/500 (68%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || || || | Sbjct 481755 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 481814 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAAT 550162 ||||| || || || | | | || ||||| || || | || ||||| || ||| Sbjct 481815 TTCACCGATACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCA-TG--AAT 481871 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| |||||||||| |||||| | || || |||| ||||||||| | | Sbjct 481872 CCCCAGAACACTGTTTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTT 481931 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || |||||||||| | ||||||||||||| | | |||| || || || | Sbjct 481932 GTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAG 481991 Query 550282 -TATTGAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338 || || | |||| | | ||| | ||| |||| || || |||| || || Sbjct 481992 GTAATGGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTC 482047 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397 |||||| | | || ||||| | || || |||||| |||| | | | || || Sbjct 482048 TATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCA 482106 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| ||||| || || |||||||| ||||| || || || || |||| Sbjct 482107 ATGCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATG 482166 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| || || || ||||| || | |||||||||||||| ||||||||||| Sbjct 482167 CAGGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCA 482226 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 482227 TTGCCTATGGCTTAGATAAA 482246 >seq7795 Length=2761246 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 2522603 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 2522544 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||||| || |||||||| || |||||| Sbjct 2522543 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAGCCAACTGCT 2522484 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 2522483 GCTGCTATTGCCTATGG 2522467 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || |||| || || ||| Sbjct 2523430 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 2523371 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || ||| Sbjct 2523370 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACT 2523311 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | | ||||| ||||| || || Sbjct 2523310 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 2523251 Query 550178 TTTG 550181 |||| Sbjct 2523250 TTTG 2523247 >seq5744 Length=65993 Score = 123 bits (136), Expect = 2e-22 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 |||| | ||||||||| |||| || | || | | ||| || ||| || || || | Sbjct 14224 TTTTGAAAAAAATGAAAAAAACTGCGGAAGATTATTTAGGTGAAACAGTAACAGAAGCTG 14283 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || || || || || || ||||| ||||||||||||| || ||||||||||| | Sbjct 14284 TTATTACAGTTCCTGCTTACTTCAATGATGCACAACGTCAAGCAACAAAAGATGCTGGTC 14343 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 |||||||||| || | ||| ||||| || || ||||| ||||||||||||||||| Sbjct 14344 GTATTGCTGGTCTAGAAGTTAAACGTATCATTAACGAACCAACTGCTGCTGCACTTGC 14401 Score = 95.1 bits (104), Expect = 1e-13 Identities = 257/388 (66%), Gaps = 23/388 (6%) Strand=Plus/Plus Query 552202 AAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 |||| ||| || || ||||| |||||||| |||||| |||||||||| || | | Sbjct 14955 AAAGATGTGAACCCGGATGAAGCTGTTGCAATTGGTGCTGCAATTCAAGGTGCGGTATTG 15014 Query 552261 TCTGG--ACAAA-CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTA 552317 ||||| ||||| |||| | ||| || |||||| | || || || || Sbjct 15015 TCTGGTGACAAAACTGACG------TAC------TTTTACTTG---ACGTAACACCATTA 15059 Query 552318 TCTCTTGGTTTAGAAACAGTTGGAGG--TATTATGACTAATCTTATCGATAGAAATACTA 552375 | |||||| | ||||| | || || ||||| ||| |||| || | ||| || | Sbjct 15060 ACACTTGGTATCGAAACCATGGGTGGCGTATTA--ACTGCAATTATTGAGAAAAACACCA 15117 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | |||||| || ||||||| || |||||||| ||||||| ||| | || || Sbjct 15118 CGATTCCTGCGAAGAAATCTCAAGTGTTTTCTACAGCAGCAGATAACCAACCAGCGGTAG 15177 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 ||| | ||| |||| ||| | ||| | || || | || || | |||| | Sbjct 15178 ATATTTCAGTTTACCAAGGTGAACGTAAAATGGCTCAACAAAACAAATTGTTGGGTAACT 15237 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 | | |||| | ||||| ||||| || ||||| || || ||||||||||| | |||| Sbjct 15238 TCCAATTAGGCGACATTCCACCTGCGCCACGTGGTGTGCCACAAATTGAAGTATCGTTCG 15297 Query 552556 ATATCGATGCCAATGGAATTTTGAATGT 552583 | ||| |||| |||| || || || || Sbjct 15298 ACATCAATGCTGATGGTATCTTAAAAGT 15325 >seq8560 Length=3069389 Score = 104 bits (114), Expect = 2e-16 Identities = 137/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| | ||| | | |||||| | ||| ||||| ||||| || ||||| Sbjct 2390257 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCT 2390198 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| ||||||||||||||||| ||||| || || || |||| | || ||||| Sbjct 2390197 TTGCTG-TCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGT 2390139 Query 563412 ATCAGTGTG-AGTACATTCGAGAGTAACAGTTTTACCAGT-AAGAGTTTTAACGAAAATT 563469 ||||| | | || || |||||| | || || || || |||||| || || ||||| Sbjct 2390138 ATCAGAGGGCTCGACCTT-GAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATC 2390080 Query 563470 TGCAT 563474 ||||| Sbjct 2390079 TGCAT 2390075 >seq504 Length=1076656 Score = 102 bits (112), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 || ||| |||| || | | |||| | ||| ||||| |||| | ||| | | |||||| Sbjct 268486 ACTAGACGAAGAGTGAACTCCTTTTG-AATGTTGTAGTCAGACAAAGTACATCCATCTTC 268428 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| || Sbjct 268427 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTG 268368 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTT 563444 || || | ||||| || ||||||| | | | || ||||| | || || Sbjct 268367 GATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTT 268308 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || |||||||| ||||| Sbjct 268307 CCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278 >seq90 Length=1189934 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963 >seq10398 Length=50767 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| | || || || || || || ||||| || || ||||| || ||||| |||| Sbjct 13979 AAGAATTGACCGAAGCCGTCATCACGGTACCGGCTTACTTTAACGATAGCCAACGCCAAG 13920 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 | || ||||||||||| |||||||| || || | || ||||| ||||| || || | Sbjct 13919 CAACGAAAGATGCTGGCCGTATTGCAGGTCTGGAAGTAAAACGTATCATCAACGAGCCAA 13860 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGATAAACA 550539 | |||||||| | |||| ||| | |||||||| Sbjct 13859 CCGCTGCTGCGTTAGCATTTGGTTTGGATAAACA 13826 >seq6714 Length=1758414 Score = 91.5 bits (100), Expect = 1e-12 Identities = 93/119 (78%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 602701 TAGGAGATACTAATAG-TGCATTATCTGCTATTTCAGCGAAAAGATTAAAAATACCAATT 602759 |||| ||||| ||||| ||| || |||| ||| ||||||| || ||| || |||||| Sbjct 894671 TAGGTGATACGAATAGCTGCCTTG-CTGCAATTCCAGCGAAGCGACGAAAGATCCCAATT 894613 Query 602760 TTCCATATGGAAGCTGGTAATCGTTGTTTTGATCAATTGGTTCCTGAAGAAATTAATCG 602818 || || ||||| ||||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 894612 TTTCACATGGAGGCTGGTAATCGTTGTTTCGATAGCCGTGTTCCCGAAGAAATCAATCG 894554 >seq3764 Length=1885950 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 1780300 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 1780243 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 1780242 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 1780183 Query 563384 GAATTTTTTGTTTTAC--TGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || ||||| | ||| |||||||| | | | || ||||| | || Sbjct 1780182 GGATCTTGGCCTTTACATTTCCT--ATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 1780125 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || || | || || || |||||||| ||| Sbjct 1780124 CTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq8939 Length=223461 Score = 86.0 bits (94), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 865344 GGACCATGCTTTAATGCAGCTGCAGAATAACCTTCTGCATGAATATAAGATATTTCTTTT 865403 || ||||| || ||| || |||||| ||||||||| ||||||||||| || |||||||| Sbjct 154730 GGGCCATGTTTCAATTCACCTGCAGCATAACCTTCAGCATGAATATATGAAATTTCTTTA 154671 Query 865404 ATTTTTAATGAACCTTC 865420 | |||||||| |||||| Sbjct 154670 AGTTTTAATGCACCTTC 154654 >seq899 Length=2520420 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | | ||| || ||||| |||| || | Sbjct 2265320 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGACAGGG 2265377 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| |||||||| || | || || || || || || || | Sbjct 2265378 TGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGC 2265437 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 ||||||| ||||| || || || || ||| || || ||| | || | || || Sbjct 2265438 CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACT-TGGCTCCACCTCC 2265496 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||| ||||||||||| || || || || || || ||||| Sbjct 2265497 AGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028499612163910