Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq6997 150 1e-30
seq7795 125 6e-23
seq5744 123 2e-22
seq8560 104 2e-16
seq504 102 7e-16
seq90 96.9 3e-14
seq10398 93.3 3e-13
seq6714 91.5 1e-12
seq3764 91.5 1e-12
seq8939 86.0 5e-11
seq899 86.0 5e-11
>seq6997
Length=2532458
Score = 150 bits (166), Expect = 1e-30
Identities = 339/500 (68%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| || || || || || ||||| || || || ||| | || || || || || |
Sbjct 481755 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 481814
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAAT 550162
||||| || || || | | | || ||||| || || | || ||||| || |||
Sbjct 481815 TTCACCGATACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCA-TG--AAT 481871
Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222
|| || ||| |||||||||| |||||| | || || |||| ||||||||| | |
Sbjct 481872 CCCCAGAACACTGTTTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTT 481931
Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281
|| || |||||||||| | ||||||||||||| | | |||| || || || |
Sbjct 481932 GTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAG 481991
Query 550282 -TATTGAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338
|| || | |||| | | ||| | ||| |||| || || |||| || ||
Sbjct 481992 GTAATGGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTC 482047
Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397
|||||| | | || ||||| | || || |||||| |||| | | | || ||
Sbjct 482048 TATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCA 482106
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || ||||| ||||| || || |||||||| ||||| || || || || ||||
Sbjct 482107 ATGCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATG 482166
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || ||| || || || ||||| || | |||||||||||||| |||||||||||
Sbjct 482167 CAGGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCA 482226
Query 550518 TTGCATATGGACTTGATAAA 550537
|||| ||||| | ||||||
Sbjct 482227 TTGCCTATGGCTTAGATAAA 482246
>seq7795
Length=2761246
Score = 125 bits (138), Expect = 6e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| | || || | || ||||| || ||||| |||||||| || ||||| |||||
Sbjct 2522603 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 2522544
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || ||||| ||||| || |||||||| || ||||||
Sbjct 2522543 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAGCCAACTGCT 2522484
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 2522483 GCTGCTATTGCCTATGG 2522467
Score = 102 bits (112), Expect = 7e-16
Identities = 133/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| ||| |||||| ||||| | || |||| || || |||
Sbjct 2523430 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 2523371
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||| |||| || ||| ||||| | || || || |||
Sbjct 2523370 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACT 2523311
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177
|||| || | |||||||| ||||| | |||| | | ||||| ||||| || ||
Sbjct 2523310 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 2523251
Query 550178 TTTG 550181
||||
Sbjct 2523250 TTTG 2523247
>seq5744
Length=65993
Score = 123 bits (136), Expect = 2e-22
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403
|||| | ||||||||| |||| || | || | | ||| || ||| || || || |
Sbjct 14224 TTTTGAAAAAAATGAAAAAAACTGCGGAAGATTATTTAGGTGAAACAGTAACAGAAGCTG 14283
Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463
| || || || || || || || ||||| ||||||||||||| || ||||||||||| |
Sbjct 14284 TTATTACAGTTCCTGCTTACTTCAATGATGCACAACGTCAAGCAACAAAAGATGCTGGTC 14343
Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521
|||||||||| || | ||| ||||| || || ||||| |||||||||||||||||
Sbjct 14344 GTATTGCTGGTCTAGAAGTTAAACGTATCATTAACGAACCAACTGCTGCTGCACTTGC 14401
Score = 95.1 bits (104), Expect = 1e-13
Identities = 257/388 (66%), Gaps = 23/388 (6%)
Strand=Plus/Plus
Query 552202 AAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260
|||| ||| || || ||||| |||||||| |||||| |||||||||| || | |
Sbjct 14955 AAAGATGTGAACCCGGATGAAGCTGTTGCAATTGGTGCTGCAATTCAAGGTGCGGTATTG 15014
Query 552261 TCTGG--ACAAA-CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTA 552317
||||| ||||| |||| | ||| || |||||| | || || || ||
Sbjct 15015 TCTGGTGACAAAACTGACG------TAC------TTTTACTTG---ACGTAACACCATTA 15059
Query 552318 TCTCTTGGTTTAGAAACAGTTGGAGG--TATTATGACTAATCTTATCGATAGAAATACTA 552375
| |||||| | ||||| | || || ||||| ||| |||| || | ||| || |
Sbjct 15060 ACACTTGGTATCGAAACCATGGGTGGCGTATTA--ACTGCAATTATTGAGAAAAACACCA 15117
Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435
| |||||| || ||||||| || |||||||| ||||||| ||| | || ||
Sbjct 15118 CGATTCCTGCGAAGAAATCTCAAGTGTTTTCTACAGCAGCAGATAACCAACCAGCGGTAG 15177
Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495
||| | ||| |||| ||| | ||| | || || | || || | |||| |
Sbjct 15178 ATATTTCAGTTTACCAAGGTGAACGTAAAATGGCTCAACAAAACAAATTGTTGGGTAACT 15237
Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555
| | |||| | ||||| ||||| || ||||| || || ||||||||||| | ||||
Sbjct 15238 TCCAATTAGGCGACATTCCACCTGCGCCACGTGGTGTGCCACAAATTGAAGTATCGTTCG 15297
Query 552556 ATATCGATGCCAATGGAATTTTGAATGT 552583
| ||| |||| |||| || || || ||
Sbjct 15298 ACATCAATGCTGATGGTATCTTAAAAGT 15325
>seq8560
Length=3069389
Score = 104 bits (114), Expect = 2e-16
Identities = 137/185 (74%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| |||| | ||| | | |||||| | ||| ||||| ||||| || |||||
Sbjct 2390257 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCT 2390198
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
|||||| ||||||||||||||||| ||||| || || || |||| | || |||||
Sbjct 2390197 TTGCTG-TCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGT 2390139
Query 563412 ATCAGTGTG-AGTACATTCGAGAGTAACAGTTTTACCAGT-AAGAGTTTTAACGAAAATT 563469
||||| | | || || |||||| | || || || || |||||| || || |||||
Sbjct 2390138 ATCAGAGGGCTCGACCTT-GAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATC 2390080
Query 563470 TGCAT 563474
|||||
Sbjct 2390079 TGCAT 2390075
>seq504
Length=1076656
Score = 102 bits (112), Expect = 7e-16
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324
|| ||| |||| || | | |||| | ||| ||||| |||| | ||| | | ||||||
Sbjct 268486 ACTAGACGAAGAGTGAACTCCTTTTG-AATGTTGTAGTCAGACAAAGTACATCCATCTTC 268428
Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384
||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 268427 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTG 268368
Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTT 563444
|| || | ||||| || ||||||| | | | || ||||| | || ||
Sbjct 268367 GATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTT 268308
Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || || || || |||||||| |||||
Sbjct 268307 CCCTGTCAGGGTCTTCACGAAAATCTGCAT 268278
>seq90
Length=1189934
Score = 96.9 bits (106), Expect = 3e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || ||
Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| |||||||||| | ||||| | | || |||||||| ||
Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963
>seq10398
Length=50767
Score = 93.3 bits (102), Expect = 3e-13
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445
||||| | || || || || || || ||||| || || ||||| || ||||| ||||
Sbjct 13979 AAGAATTGACCGAAGCCGTCATCACGGTACCGGCTTACTTTAACGATAGCCAACGCCAAG 13920
Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505
| || ||||||||||| |||||||| || || | || ||||| ||||| || || |
Sbjct 13919 CAACGAAAGATGCTGGCCGTATTGCAGGTCTGGAAGTAAAACGTATCATCAACGAGCCAA 13860
Query 550506 CTGCTGCTGCACTTGCATATGGACTTGATAAACA 550539
| |||||||| | |||| ||| | ||||||||
Sbjct 13859 CCGCTGCTGCGTTAGCATTTGGTTTGGATAAACA 13826
>seq6714
Length=1758414
Score = 91.5 bits (100), Expect = 1e-12
Identities = 93/119 (78%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 602701 TAGGAGATACTAATAG-TGCATTATCTGCTATTTCAGCGAAAAGATTAAAAATACCAATT 602759
|||| ||||| ||||| ||| || |||| ||| ||||||| || ||| || ||||||
Sbjct 894671 TAGGTGATACGAATAGCTGCCTTG-CTGCAATTCCAGCGAAGCGACGAAAGATCCCAATT 894613
Query 602760 TTCCATATGGAAGCTGGTAATCGTTGTTTTGATCAATTGGTTCCTGAAGAAATTAATCG 602818
|| || ||||| ||||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 894612 TTTCACATGGAGGCTGGTAATCGTTGTTTCGATAGCCGTGTTCCCGAAGAAATCAATCG 894554
>seq3764
Length=1885950
Score = 91.5 bits (100), Expect = 1e-12
Identities = 149/211 (71%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|| |||||||| || ||| |||| ||| ||||| |||| | ||| | | |||||
Sbjct 1780300 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 1780243
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| |
Sbjct 1780242 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 1780183
Query 563384 GAATTTTTTGTTTTAC--TGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGT 563441
| || || ||||| | ||| |||||||| | | | || ||||| | ||
Sbjct 1780182 GGATCTTGGCCTTTACATTTCCT--ATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 1780125
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472
|| || | || || || |||||||| |||
Sbjct 1780124 CTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq8939
Length=223461
Score = 86.0 bits (94), Expect = 5e-11
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 865344 GGACCATGCTTTAATGCAGCTGCAGAATAACCTTCTGCATGAATATAAGATATTTCTTTT 865403
|| ||||| || ||| || |||||| ||||||||| ||||||||||| || ||||||||
Sbjct 154730 GGGCCATGTTTCAATTCACCTGCAGCATAACCTTCAGCATGAATATATGAAATTTCTTTA 154671
Query 865404 ATTTTTAATGAACCTTC 865420
| |||||||| ||||||
Sbjct 154670 AGTTTTAATGCACCTTC 154654
>seq899
Length=2520420
Score = 86.0 bits (94), Expect = 5e-11
Identities = 156/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
||||| ||||| || || || || || ||| | | ||| || ||||| |||| || |
Sbjct 2265320 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGACAGGG 2265377
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || ||||| |||||||| || | || || || || || || || |
Sbjct 2265378 TGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGC 2265437
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430
||||||| ||||| || || || || ||| || || ||| | || | || ||
Sbjct 2265438 CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACT-TGGCTCCACCTCC 2265496
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||||| ||||||||||| || || || || || || |||||
Sbjct 2265497 AGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028499612163910
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