Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq9683 104 7e-18
>seq9683
Length=137075
Score = 104 bits (114), Expect = 7e-18
Identities = 316/484 (65%), Gaps = 15/484 (3%)
Strand=Plus/Plus
Query 66 TGGGAGGCCATCGAGACGGCGTACCGGGCCGGAGTGATGTCCCTCCGAGAAATAGCGTCA 125
|||||| ||||||| || ||| |||| || | | | ||| | | || || |
Sbjct 54425 TGGGAGCGCATCGAGCTGGACTACAGGGCGGGCATCAAGAGCCTGAGGCAGATCGCAGCG 54484
Query 126 CAGCACGGTATCAGTGAAGGCGCTATCCGTAAGCGTGCCAAGCGCGACGACTGGTCGCGT 185
|||| || ||||| || || || ||||| ||||| |||||||| ||||||||| |||
Sbjct 54485 GAGCAGGGCATCAGCGAGGGGGCGATCCGCAAGCGGGCCAAGCGTGACGACTGGAGCCGT 54544
Query 186 GACCTCAATGCGAAGATTCAGCAAAAGGCTGATGATCTGGTACGCAAACAGGAGGTACGC 245
||||| | | || ||| | ||||| || | |||||||||||| ||| |||||||
Sbjct 54545 GACCTGTCGGAGCGCATCCAGGAGAAGGCAGAGCAGCTGGTACGCAAAGAGGCGGTACGC 54604
Query 246 AAGCNGGTACGCAACGAAAGCACTTTGACCGAGCGCGTACTGATAGAGGCGACTGCCGAG 305
| ||||||| || | ||| | |||| || | || | || |||| ||| ||
Sbjct 54605 AGCGAGGTACGCGCGGAGCGTACTGCGTCCGAACGTGAGGTGGTGGACGCGAATGCGCAG 54664
Query 306 GTAATTGCCACGGTACGCATGGAGCACCGGGGAGACATCCGCCGGGCTCGTGAATTGACC 365
| ||||| ||| |||| || | ||||||| ||||| || | | |||
Sbjct 54665 GCTGGGGCCAC------CAT-CCGCACAGGCGGGACATCCAGCGGGCACGCAAGATCACC 54717
Query 366 AACACGCTATTCGATGAACTTGGTGC-----GCAG-TGCGCAGA-TGTAAGCGCGCTCGA 418
||| |||| | ||||| | ||| || |||| ||| | | || | || |
Sbjct 54718 AACGCGCTGCTGGATGAGC-TGGAGCAGATGGCAGACGCGGACACGGTGGCCTACCTGCA 54776
Query 419 GCAGTTGGGCGACATCATGTTTGATCCCGACGATAAAGGCCGGGACCGGCTCAATGAAAT 478
| || ||||||| || || | || ||||| || ||| |||| ||| || || |
Sbjct 54777 GGAGCTGGGCGAGATGCTGCGCGCGCCAGACGACAACGGCATGGACAAGCTGAACGACCT 54836
Query 479 TTATCAGAAAGTGATCAGCCTGCCTTCCCGCGTTAAATCCATGAAAGACCTGAGCGACAG 538
|| ||||| || ||||||||||| ||| || ||||||| | ||| ||| ||
Sbjct 54837 CTACCAGAAGGTCATCAGCCTGCCGGAGCGCTCCAAGACCATGAAGGTGCTGGCCGAGAG 54896
Query 539 CCTG 542
||||
Sbjct 54897 CCTG 54900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158493252275804
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |