Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq12743 84.2 3e-11 >seq12743 Length=996736 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2259 TGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGG 2318 || |||||||| |||||||| ||||| ||| |||| ||||| ||| |||| ||| ||| Sbjct 709494 TGTGAGATCCAGCTGACCTGCTCTGTGGAGAATCCAAATGATAACGTCTCACTCAGGTGG 709435 Query 2319 GAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGG 2378 ||| | || || | || | || | || ||| | | ||||||||||||| | Sbjct 709434 CAGGTCGCAGGAAATCCATATCATAGTGAAGCAAATCTCTCTATATCCTGGGACCCCAAG 709375 Query 2379 AACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTC 2438 | | |||||| ||| |||||| ||||| || || || |||| ||| | | || | | Sbjct 709374 AGCCTCAGTGAAGAGACCTACACCTGCATAGCTGAGAATCCTGTCAGCTCTTTATCCTCC 709315 Query 2439 ACGGTCTCGGCCCAGA 2454 | ||||| | | ||| Sbjct 709314 TCTGTCTCTGACAAGA 709299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629164745303640