Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq7352 95.1 2e-14 seq9673 89.7 9e-13 seq8280 86.0 1e-11 >seq7352 Length=278960 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 ||||||||||| ||||||||||||||| |||| | ||||||||||| | |||||||||| Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214 Query 16181 A-CTGAGCTAAGAGCGC 16196 | |||||||||| |||| Sbjct 263215 AGCTGAGCTAAGGGCGC 263231 >seq9673 Length=4878 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 16120 ATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATC 16179 |||||| ||| ||||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504 Query 16180 CA-CTGAGCTA 16189 || |||||||| Sbjct 503 CAGCTGAGCTA 493 >seq8280 Length=144189 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 16114 GCCGGAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGC 16173 || ||| ||||||||||| ||||| ||||||||| |||| ||||||||||| ||| Sbjct 25963 GCGGGAGTGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGC 26022 Query 16174 TCTATCCA-CTGAGCTAAGAGCGC 16196 |||||||| |||||||||| |||| Sbjct 26023 TCTATCCAGCTGAGCTAAGGGCGC 26046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910922897867880