Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq7352 95.1 2e-14
seq9673 89.7 9e-13
seq8280 86.0 1e-11
>seq7352
Length=278960
Score = 95.1 bits (104), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180
||||||||||| ||||||||||||||| |||| | ||||||||||| | ||||||||||
Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214
Query 16181 A-CTGAGCTAAGAGCGC 16196
| |||||||||| ||||
Sbjct 263215 AGCTGAGCTAAGGGCGC 263231
>seq9673
Length=4878
Score = 89.7 bits (98), Expect = 9e-13
Identities = 63/71 (89%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 16120 ATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATC 16179
|||||| ||| ||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 563 ATGGCGATCCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATC 504
Query 16180 CA-CTGAGCTA 16189
|| ||||||||
Sbjct 503 CAGCTGAGCTA 493
>seq8280
Length=144189
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 16114 GCCGGAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGC 16173
|| ||| ||||||||||| ||||| ||||||||| |||| ||||||||||| |||
Sbjct 25963 GCGGGAGTGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGC 26022
Query 16174 TCTATCCA-CTGAGCTAAGAGCGC 16196
|||||||| |||||||||| ||||
Sbjct 26023 TCTATCCAGCTGAGCTAAGGGCGC 26046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910922897867880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |