Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq9639 187 8e-43 seq10734 168 2e-37 seq6415 145 3e-30 seq9470 122 3e-23 seq646 114 4e-21 seq9538 91.5 5e-14 seq7053 87.8 6e-13 >seq9639 Length=103419 Score = 187 bits (206), Expect = 8e-43 Identities = 240/327 (73%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||| |||||||||||||||||| | ||||| ||||| || | Sbjct 3885 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCT 3826 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||||||||||||||||| | | || | || || ||| ||| Sbjct 3825 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGG 3766 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 | ||||| ||||||||||||||||||||| |||| | || |||||| || |||| Sbjct 3765 TGGGCGACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGG 3706 Query 25000 -CGACCGA-ACAACTGTCGCGCACGCACACGGGCTATCCGTGGCTGGCGCTGAATCACCG 25057 ||| || || ||| ||||| || | | ||| ||| ||| | | || | ||| Sbjct 3705 TCGA--GACCCAGCTGGCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCG 3648 Query 25058 ---CGACTCGATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCA 25114 |||||| ||||||| ||| ||| ||| || || ||||||||| || || Sbjct 3647 GCCCGACTCCATCTTCGGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCA 3588 Query 25115 CCCGGTCATCAAGGCCCCCGTGGCCGT 25141 | | ||||||||||||||||||||| Sbjct 3587 CGAGCCCATCAAGGCCCCCGTGGCCGT 3561 >seq10734 Length=9239 Score = 168 bits (186), Expect = 2e-37 Identities = 243/333 (73%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||| ||||||||||||| ||| | |||||||| ||||||| Sbjct 1689 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGT 1748 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||||||||||||||||| | | ||| | ||| ||| ||| Sbjct 1749 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCA--CCGGCCTGGG 1806 Query 24938 GGTCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGTATTCGAACCACGTCGAG 24995 || ||||| ||| || || || ||||| | |||||||||||||||||| ||||| Sbjct 1807 CGTGGGCGACTTC--GTGCACACGCTGGGCGATGCGCACCTGTATTCGAACCACTTCGAG 1864 Query 24996 CAGGCGACCGAACAACTGTCGCG-CACGCACACGGGCTATCCGTGGCTGGCGCTGAATC- 25053 |||||| ||| || |||||||| | | | || ||| ||| |||| | |||| | Sbjct 1865 CAGGCGCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCT-GCCGACGCTGTGGTTGAACCC 1923 Query 25054 -ACCGCGACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGC 25110 | ||| ||| | |||| | | ||||||| || || ||||||| | Sbjct 1924 GGAGGTGAC-CGACCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACC 1982 Query 25111 CGCACCCGGTCATCAAGGCCCCCGTGGCCGTGT 25143 ||||||||| ||||||||| || ||||| |||| Sbjct 1983 CGCACCCGGCCATCAAGGCGCCGGTGGCGGTGT 2015 >seq6415 Length=247467 Score = 145 bits (160), Expect = 3e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||||||||||||||||||||||| || |||||||| ||||| ||| | || ||||||| Sbjct 53378 ACGGAAAGCTGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGT 53437 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||| |||||||||| | |||| | |||| ||| || Sbjct 53438 TCAACATCGCCTCCTACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGC 53497 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||||| ||| || ||| |||||||| |||||| ||| ||||||| |||| |||| Sbjct 53498 CGGGCGAGTTCGTCCACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGG 53557 Query 25000 CGACCGAACAACTGTCGCGC 25019 | |||||| ||| | ||| Sbjct 53558 CCCGCGAACAGCTGACCCGC 53577 >seq9470 Length=127963 Score = 122 bits (134), Expect = 3e-23 Identities = 139/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||||| ||| ||||| ||| ||||||||| || ||| | |||||||||||||||| Sbjct 52795 ACGGAAAACTGTCCTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGT 52736 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCC--ATTTCTTCGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||| |||||||||| || | | | | ||| ||| ||| | Sbjct 52735 TCAACATCGCCTCCTACGCCCTGCTGACCCTGATGACGGCCCAGGCCA--CCGGCCTGCA 52678 Query 24938 GGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 | |||||| ||| | ||| ||||||| |||||| ||| |||||| |||||||| Sbjct 52677 GCCCGGCGAGTTCGTGCACACCCTGGGCGACGCCCACCTCTATCTGAACCATGTCGAGCA 52618 Query 24998 GGCGA 25002 ||||| Sbjct 52617 GGCGA 52613 >seq646 Length=687 Score = 114 bits (126), Expect = 4e-21 Identities = 133/178 (75%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 24827 GCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATAT 24886 |||| ||||||||||||||||||| ||||| || |||||||||||||| ||||| || Sbjct 355 GCTGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACAT 296 Query 24887 CGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGAAGGTCGG 24943 |||| ||| || ||||||||| | ||||| ||| || || |||||| ||| Sbjct 295 CGCGTCCTATGCCCTGCTGACCATGATGGTCGCG---CAGGTCACTGGCCTGAAGCCCGG 239 Query 24944 CGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCG 25001 ||| ||| | ||| ||| |||| ||||| ||||| || || ||||||||||| Sbjct 238 CGAGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGGCG 181 >seq9538 Length=646221 Score = 91.5 bits (100), Expect = 5e-14 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||| |||| ||||||||||||||||| ||||||| | || ||||||||||||| Sbjct 486910 ACGGACGGCTGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGT 486969 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| ||| |||||||| ||| | | ||| | | || ||||| Sbjct 486970 TCAACATCGCTTCCTATGCGCTGCTCACCATGATGGTGGCGCAGGTGACGGGGCTGAAAC 487029 Query 24940 TCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 |||||| ||| || || || || |||| ||| | ||||| ||||| |||| || Sbjct 487030 CCGGCGATTTC--GTGCACACGCTGGGTGACGCGCACATCTATTCCAACCATTTCGAACA 487087 Query 24998 GGCGACCGAACAACTGTCGCGCACGC 25023 |||| ||| || || ||||| || Sbjct 487088 GGCGCGCGAGCAGTTGCAGCGCAAGC 487113 >seq7053 Length=464797 Score = 87.8 bits (96), Expect = 6e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 24822 GGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTC 24881 ||||||||| |||||||||||| |||||| || || | |||||||||||||||||| Sbjct 70429 GGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTC 70370 Query 24882 AATATCGCGAGCTACGCGCTGCTGAC 24907 || ||||| ||| ||||||||||| Sbjct 70369 AACATCGCCTCCTATGCGCTGCTGAC 70344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164143441696432