Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016655.1
Length=51342
Score E
Sequences producing significant alignments: (Bits) Value
seq9639 187 8e-43
seq10734 168 2e-37
seq6415 145 3e-30
seq9470 122 3e-23
seq646 114 4e-21
seq9538 91.5 5e-14
seq7053 87.8 6e-13
>seq9639
Length=103419
Score = 187 bits (206), Expect = 8e-43
Identities = 240/327 (73%), Gaps = 7/327 (2%)
Strand=Plus/Minus
Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879
|||| ||||| ||||||||||| |||||||||||||||||| | ||||| ||||| || |
Sbjct 3885 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCT 3826
Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939
|||| ||||| |||||||||||||||||||| | | || | || || ||| |||
Sbjct 3825 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGG 3766
Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999
| ||||| ||||||||||||||||||||| |||| | || |||||| || ||||
Sbjct 3765 TGGGCGACTTCATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGG 3706
Query 25000 -CGACCGA-ACAACTGTCGCGCACGCACACGGGCTATCCGTGGCTGGCGCTGAATCACCG 25057
||| || || ||| ||||| || | | ||| ||| ||| | | || | |||
Sbjct 3705 TCGA--GACCCAGCTGGCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCG 3648
Query 25058 ---CGACTCGATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCA 25114
|||||| ||||||| ||| ||| ||| || || ||||||||| || ||
Sbjct 3647 GCCCGACTCCATCTTCGGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCA 3588
Query 25115 CCCGGTCATCAAGGCCCCCGTGGCCGT 25141
| | |||||||||||||||||||||
Sbjct 3587 CGAGCCCATCAAGGCCCCCGTGGCCGT 3561
>seq10734
Length=9239
Score = 168 bits (186), Expect = 2e-37
Identities = 243/333 (73%), Gaps = 15/333 (5%)
Strand=Plus/Plus
Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879
|||| ||||| ||||||||||| ||||||||||||| ||| | |||||||| |||||||
Sbjct 1689 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATCTTCCTCGGAGTGCCGT 1748
Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937
|||| ||||| |||||||||||||||||||| | | ||| | ||| ||| |||
Sbjct 1749 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCA--CCGGCCTGGG 1806
Query 24938 GGTCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGTATTCGAACCACGTCGAG 24995
|| ||||| ||| || || || ||||| | |||||||||||||||||| |||||
Sbjct 1807 CGTGGGCGACTTC--GTGCACACGCTGGGCGATGCGCACCTGTATTCGAACCACTTCGAG 1864
Query 24996 CAGGCGACCGAACAACTGTCGCG-CACGCACACGGGCTATCCGTGGCTGGCGCTGAATC- 25053
|||||| ||| || |||||||| | | | || ||| ||| |||| | |||| |
Sbjct 1865 CAGGCGCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCT-GCCGACGCTGTGGTTGAACCC 1923
Query 25054 -ACCGCGACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGC 25110
| ||| ||| | |||| | | ||||||| || || ||||||| |
Sbjct 1924 GGAGGTGAC-CGACCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACC 1982
Query 25111 CGCACCCGGTCATCAAGGCCCCCGTGGCCGTGT 25143
||||||||| ||||||||| || ||||| ||||
Sbjct 1983 CGCACCCGGCCATCAAGGCGCCGGTGGCGGTGT 2015
>seq6415
Length=247467
Score = 145 bits (160), Expect = 3e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879
||||||||||||||||||||||||| || |||||||| ||||| ||| | || |||||||
Sbjct 53378 ACGGAAAGCTGAGCTGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGT 53437
Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939
|||| ||||| |||||| |||||||||| | |||| | |||| ||| ||
Sbjct 53438 TCAACATCGCCTCCTACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGC 53497
Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999
||||| ||| || ||| |||||||| |||||| ||| ||||||| |||| ||||
Sbjct 53498 CGGGCGAGTTCGTCCACACCTTCGGCGACGCCCACCTCTATCTGAACCACCTCGACCAGG 53557
Query 25000 CGACCGAACAACTGTCGCGC 25019
| |||||| ||| | |||
Sbjct 53558 CCCGCGAACAGCTGACCCGC 53577
>seq9470
Length=127963
Score = 122 bits (134), Expect = 3e-23
Identities = 139/185 (75%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879
||||||| ||| ||||| ||| ||||||||| || ||| | ||||||||||||||||
Sbjct 52795 ACGGAAAACTGTCCTGCCTGCTTTACCAGCGCTCGGCCGACCTGTTCCTCGGCGTGCCGT 52736
Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCC--ATTTCTTCGCGGACCAGCTCGGACTGAA 24937
|||| ||||| |||||| |||||||||| || | | | | ||| ||| ||| |
Sbjct 52735 TCAACATCGCCTCCTACGCCCTGCTGACCCTGATGACGGCCCAGGCCA--CCGGCCTGCA 52678
Query 24938 GGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997
| |||||| ||| | ||| ||||||| |||||| ||| |||||| ||||||||
Sbjct 52677 GCCCGGCGAGTTCGTGCACACCCTGGGCGACGCCCACCTCTATCTGAACCATGTCGAGCA 52618
Query 24998 GGCGA 25002
|||||
Sbjct 52617 GGCGA 52613
>seq646
Length=687
Score = 114 bits (126), Expect = 4e-21
Identities = 133/178 (75%), Gaps = 6/178 (3%)
Strand=Plus/Minus
Query 24827 GCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATAT 24886
|||| ||||||||||||||||||| ||||| || |||||||||||||| ||||| ||
Sbjct 355 GCTGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACAT 296
Query 24887 CGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGAAGGTCGG 24943
|||| ||| || ||||||||| | ||||| ||| || || |||||| |||
Sbjct 295 CGCGTCCTATGCCCTGCTGACCATGATGGTCGCG---CAGGTCACTGGCCTGAAGCCCGG 239
Query 24944 CGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCG 25001
||| ||| | ||| ||| |||| ||||| ||||| || || |||||||||||
Sbjct 238 CGAGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGGCG 181
>seq9538
Length=646221
Score = 91.5 bits (100), Expect = 5e-14
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879
||||| |||| ||||||||||||||||| ||||||| | || |||||||||||||
Sbjct 486910 ACGGACGGCTGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGT 486969
Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939
|||| ||||| ||| |||||||| ||| | | ||| | | || |||||
Sbjct 486970 TCAACATCGCTTCCTATGCGCTGCTCACCATGATGGTGGCGCAGGTGACGGGGCTGAAAC 487029
Query 24940 TCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997
|||||| ||| || || || || |||| ||| | ||||| ||||| |||| ||
Sbjct 487030 CCGGCGATTTC--GTGCACACGCTGGGTGACGCGCACATCTATTCCAACCATTTCGAACA 487087
Query 24998 GGCGACCGAACAACTGTCGCGCACGC 25023
|||| ||| || || ||||| ||
Sbjct 487088 GGCGCGCGAGCAGTTGCAGCGCAAGC 487113
>seq7053
Length=464797
Score = 87.8 bits (96), Expect = 6e-13
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 24822 GGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTC 24881
||||||||| |||||||||||| |||||| || || | ||||||||||||||||||
Sbjct 70429 GGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTC 70370
Query 24882 AATATCGCGAGCTACGCGCTGCTGAC 24907
|| ||||| ||| |||||||||||
Sbjct 70369 AACATCGCCTCCTATGCGCTGCTGAC 70344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164143441696432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |