Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq9777 289 7e-74 seq1205 163 7e-36 seq551 91.5 4e-14 seq8280 87.8 4e-13 seq7352 84.2 5e-12 seq11405 82.4 2e-11 >seq9777 Length=39614 Score = 289 bits (320), Expect = 7e-74 Identities = 429/599 (72%), Gaps = 18/599 (3%) Strand=Plus/Plus Query 894 TCCGGCCACGGCATCGGTAAGTCCGCTTTCATCTCGATGCTGATTAACTGGGGCATGTCC 953 || |||||||||||||| |||||||| | | |||||||||| || |||| | | | Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582 Query 954 ACCTGCGAAGACT-GCAAGGTTGTGGTTACCGCCAACACCGACAATCAGCTGCGTACAAA 1012 || | ||||||| || || || || || ||||||||||||| |||||||| || || Sbjct 25583 ACGTTCGAAGACACGCGCGGC-GTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAA 25641 Query 1013 GACATGGCCTGAAATCATCAAATGG--TCGAACCTGGCTATCACGAAAGAATGGTTTAC- 1069 ||| ||| | ||| | || ||| | || | | || ||| || || ||| || Sbjct 25642 GACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAAGGACTGGGCCACG 25699 Query 1070 CTGCACCGCCACGGCGATGTACAGCAACGATCCAGGTCACGACAAACGCTGGCGCGCTGA 1129 ||| |||||||||||| || |||||||| || || |||||||| ||||||| || Sbjct 25700 CTG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGA 25758 Query 1130 CGCAATCCCGTGGTCTGAGCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAA 1189 ||| | |||||||| || |||| |||||||| |||||||| |||||||||||| | Sbjct 25759 CGCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCG 25818 Query 1190 GCGCATTATCGTGGTGTTCGACGAAGCGTCCAACATTGCCGATCTGGTATGGGAAGTAGC 1249 |||||| | ||||||||||||| || || ||| ||||| ||| |||||||| || Sbjct 25819 GCGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGC 25878 Query 1250 AGAGGGTGCGCTTACGGACGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGAC 1309 ||||||||||| || ||| ||| ||||| || || |||| ||||| || ||| | || Sbjct 25879 CGAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCAC 25938 Query 1310 GCGTAACACTGGGCGTTTCCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAGTGCGC 1369 || ||||| || || ||||| || || |||||| | ||| | | ||| | || Sbjct 25939 CCGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGA 25998 Query 1370 GCAGATTGACAGCCGCACCGTGGAAGGCACCAACAAG---CAG--CAACTGCAAAAGTGG 1424 |||||| |||||||||||||| || || ||| | || | | ||| | Sbjct 25999 GCAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTGGTCGAGGCCGAGCGCA-----TG 26053 Query 1425 GTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCC 1483 ||| |||||||||||| ||||||||| | |||||||| || | ||||| | ||||| Sbjct 26054 GTGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112 >seq1205 Length=48877 Score = 163 bits (180), Expect = 7e-36 Identities = 460/697 (66%), Gaps = 22/697 (3%) Strand=Plus/Plus Query 798 GGCCCGCGCAAATGGCAGGCCGACGCATTCCGCGAGATACGCGATCATCTCCAGAATCCC 857 |||||||||| |||||||||||| | |||| |||| || |||||| | || Sbjct 35755 GGCCCGCGCACATGGCAGGCCGAGGTGTTCCAGCAGATCGAGGAGCATCTCGCCAGCCCG 35814 Query 858 GCGACGCGTCACCAGCC--GCTG-AT-GCTGTCTCGTGCATCCGGCCACGGCATCGGTAA 913 | |||||| ||| ||| || | || || ||| ||| |||||||||| ||||| || Sbjct 35815 GAGACGCGGCACGCGCCTTGCCGCATCGCGGTCGCGT----CCGGCCACGGTATCGGCAA 35870 Query 914 GTCCGCTTTCATCTCGATGCTGATTAACTGGGGCATGTCCACCTGCGAAGACTGCAAGGT 973 ||| || |||||| ||| | | || |||| | |||||||| ||| | | Sbjct 35871 GTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTCGACACCTGCGTCGACACCCGCAT 35930 Query 974 TGTGGTTACCGCCAACACCGACAATCAGCTGCGTACAAAGACATGGCCTGAAATCATCAA 1033 || | |||||||| ||||| ||||||| || ||||| |||| || | || Sbjct 35931 CGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACCAAGACTGGGCCGGAGCTGGCGAA 35990 Query 1034 ATGGTCGAACCTGGCTATCACGAAAGAATGGTTTACCTGCACCGCCACGGCGAT---GTA 1090 ||| || | || || |||| || ||||| | || ||||| || || Sbjct 35991 GTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAAGGTCAATGCCACCAGCATCGTGTC 36050 Query 1091 CAGCAA---CGATCCAGGTCACGACAAACGCTGGCGCGCTGACGCAATCCCGTGGTCTGA 1147 | || ||| | |||| || ||||||| | ||| || | ||||| | Sbjct 36051 GACCATGGGCGACC--GGTCG----AAGTCCTGGCGCACCGACCTTGTCACCTGGTCGGC 36104 Query 1148 GCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAAGCGCATTATCGTGGTGTT 1207 | |||| |||||||| ||||| || ||||| || || | |||||||| | || | || Sbjct 36105 GAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGCAAGCGCATCGTGCTGATCTT 36164 Query 1208 CGACGAAGCGTCCAACATTGCCGATCTGGTATGGGAAGTAGCAGAGGGTGCGCTTACGGA 1267 |||||| ||||| ||| | | ||| ||||| || || || ||||| || || Sbjct 36165 CGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTCGCGCTCGGCGCGCTCACCGA 36224 Query 1268 CGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGACGCGTAACACTGGGCGTTT 1327 |||||||||||| || | ||| | || || || || || || | ||||| || || Sbjct 36225 CGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCCACACTCAACACCGGCTCGTT 36284 Query 1328 CCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAG-TGCGCGCAGATTGACAGCCGCA 1386 ||| || || | |||| | || |||||| ||| |||||| || || |||| Sbjct 36285 CCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACGCG-GCAGATCGATAGTCGCA 36343 Query 1387 CCGTGGAAGGCACCAACAAGCAGCAACTGCAAAAGTGGGTGGACGACTACGGCGAAGACA 1446 || || |||||||||||| | | || | || ||| | |||||||| |||| Sbjct 36344 ATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGGTCACCACCTACGGCGCGGACA 36403 Query 1447 GCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCC 1483 |||| |||||||||||||||||||||| || ||||| Sbjct 36404 GCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440 >seq551 Length=68878 Score = 91.5 bits (100), Expect = 4e-14 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||||||| | ||||||||||||||| | ||| ||||||||||||||| |||||||||| Sbjct 2835 TGGTGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCC 2894 Query 2873 AACTGAGCTA 2882 |||||||||| Sbjct 2895 AACTGAGCTA 2904 >seq8280 Length=144189 Score = 87.8 bits (96), Expect = 4e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||||||| ||||||||||| || ||||||||||||||| |||||||||| Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029 Query 2873 AACTGAGCTAA 2883 | ||||||||| Sbjct 26030 AGCTGAGCTAA 26040 >seq7352 Length=278960 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||||||||||||||||||| || ||||||||||||| |||||||||| Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214 Query 2873 AACTGAGCTAA 2883 | ||||||||| Sbjct 263215 AGCTGAGCTAA 263225 >seq11405 Length=110570 Score = 82.4 bits (90), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 31585 ACGGCGTTAACCAGTTGTGCTTCATAGCCAAGAGTTCCGTTTACAACGTGCGTCTTCTGT 31644 |||||| |||| || || |||||||| | || ||||| || | ||| |||||||| Sbjct 79919 ACGGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGG 79978 Query 31645 GCAACAGCGAACGGGTTCATGCCCCATTGCGCCGCCTGCATGGTTACTGCCAGGCAGTCA 31704 || || ||||| |||||||||||||| ||| | ||||| | | || | |||||| Sbjct 79979 GCCACGGCGAAGGGGTTCATGCCCCACTGCATGGACTGCAGCGAGATGGCGAAGCAGTCG 80038 Query 31705 GAC-GGCTTACCTGCAAGATGAGCAGGAACGGTAGCTTTACTGCAGGCCATCAACTCAGC 31763 | ||| || || || || || ||||| | || | || |||||||| || || Sbjct 80039 CCCTTGCTGCCCCGC-AGGTGTTGGGGCACGGTCGTCTTGCCGCTGGCCATCAGTTCGGC 80097 Query 31764 GAAGCGCACCAGTTGATTCATG 31785 || |||| |||| ||| |||| Sbjct 80098 GATGCGCTCCAGGCGATCCATG 80119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123645085135668