Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016761.1
Length=38684
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 289 7e-74
seq1205 163 7e-36
seq551 91.5 4e-14
seq8280 87.8 4e-13
seq7352 84.2 5e-12
seq11405 82.4 2e-11
>seq9777
Length=39614
Score = 289 bits (320), Expect = 7e-74
Identities = 429/599 (72%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 894 TCCGGCCACGGCATCGGTAAGTCCGCTTTCATCTCGATGCTGATTAACTGGGGCATGTCC 953
|| |||||||||||||| |||||||| | | |||||||||| || |||| | | |
Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582
Query 954 ACCTGCGAAGACT-GCAAGGTTGTGGTTACCGCCAACACCGACAATCAGCTGCGTACAAA 1012
|| | ||||||| || || || || || ||||||||||||| |||||||| || ||
Sbjct 25583 ACGTTCGAAGACACGCGCGGC-GTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAA 25641
Query 1013 GACATGGCCTGAAATCATCAAATGG--TCGAACCTGGCTATCACGAAAGAATGGTTTAC- 1069
||| ||| | ||| | || ||| | || | | || ||| || || ||| ||
Sbjct 25642 GACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAAGGACTGGGCCACG 25699
Query 1070 CTGCACCGCCACGGCGATGTACAGCAACGATCCAGGTCACGACAAACGCTGGCGCGCTGA 1129
||| |||||||||||| || |||||||| || || |||||||| ||||||| ||
Sbjct 25700 CTG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGA 25758
Query 1130 CGCAATCCCGTGGTCTGAGCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAA 1189
||| | |||||||| || |||| |||||||| |||||||| |||||||||||| |
Sbjct 25759 CGCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCG 25818
Query 1190 GCGCATTATCGTGGTGTTCGACGAAGCGTCCAACATTGCCGATCTGGTATGGGAAGTAGC 1249
|||||| | ||||||||||||| || || ||| ||||| ||| |||||||| ||
Sbjct 25819 GCGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGC 25878
Query 1250 AGAGGGTGCGCTTACGGACGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGAC 1309
||||||||||| || ||| ||| ||||| || || |||| ||||| || ||| | ||
Sbjct 25879 CGAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCAC 25938
Query 1310 GCGTAACACTGGGCGTTTCCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAGTGCGC 1369
|| ||||| || || ||||| || || |||||| | ||| | | ||| | ||
Sbjct 25939 CCGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGA 25998
Query 1370 GCAGATTGACAGCCGCACCGTGGAAGGCACCAACAAG---CAG--CAACTGCAAAAGTGG 1424
|||||| |||||||||||||| || || ||| | || | | ||| |
Sbjct 25999 GCAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTGGTCGAGGCCGAGCGCA-----TG 26053
Query 1425 GTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCC 1483
||| |||||||||||| ||||||||| | |||||||| || | ||||| | |||||
Sbjct 26054 GTGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112
>seq1205
Length=48877
Score = 163 bits (180), Expect = 7e-36
Identities = 460/697 (66%), Gaps = 22/697 (3%)
Strand=Plus/Plus
Query 798 GGCCCGCGCAAATGGCAGGCCGACGCATTCCGCGAGATACGCGATCATCTCCAGAATCCC 857
|||||||||| |||||||||||| | |||| |||| || |||||| | ||
Sbjct 35755 GGCCCGCGCACATGGCAGGCCGAGGTGTTCCAGCAGATCGAGGAGCATCTCGCCAGCCCG 35814
Query 858 GCGACGCGTCACCAGCC--GCTG-AT-GCTGTCTCGTGCATCCGGCCACGGCATCGGTAA 913
| |||||| ||| ||| || | || || ||| ||| |||||||||| ||||| ||
Sbjct 35815 GAGACGCGGCACGCGCCTTGCCGCATCGCGGTCGCGT----CCGGCCACGGTATCGGCAA 35870
Query 914 GTCCGCTTTCATCTCGATGCTGATTAACTGGGGCATGTCCACCTGCGAAGACTGCAAGGT 973
||| || |||||| ||| | | || |||| | |||||||| ||| | |
Sbjct 35871 GTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTCGACACCTGCGTCGACACCCGCAT 35930
Query 974 TGTGGTTACCGCCAACACCGACAATCAGCTGCGTACAAAGACATGGCCTGAAATCATCAA 1033
|| | |||||||| ||||| ||||||| || ||||| |||| || | ||
Sbjct 35931 CGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACCAAGACTGGGCCGGAGCTGGCGAA 35990
Query 1034 ATGGTCGAACCTGGCTATCACGAAAGAATGGTTTACCTGCACCGCCACGGCGAT---GTA 1090
||| || | || || |||| || ||||| | || ||||| || ||
Sbjct 35991 GTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAAGGTCAATGCCACCAGCATCGTGTC 36050
Query 1091 CAGCAA---CGATCCAGGTCACGACAAACGCTGGCGCGCTGACGCAATCCCGTGGTCTGA 1147
| || ||| | |||| || ||||||| | ||| || | ||||| |
Sbjct 36051 GACCATGGGCGACC--GGTCG----AAGTCCTGGCGCACCGACCTTGTCACCTGGTCGGC 36104
Query 1148 GCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAAGCGCATTATCGTGGTGTT 1207
| |||| |||||||| ||||| || ||||| || || | |||||||| | || | ||
Sbjct 36105 GAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGCAAGCGCATCGTGCTGATCTT 36164
Query 1208 CGACGAAGCGTCCAACATTGCCGATCTGGTATGGGAAGTAGCAGAGGGTGCGCTTACGGA 1267
|||||| ||||| ||| | | ||| ||||| || || || ||||| || ||
Sbjct 36165 CGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTCGCGCTCGGCGCGCTCACCGA 36224
Query 1268 CGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGACGCGTAACACTGGGCGTTT 1327
|||||||||||| || | ||| | || || || || || || | ||||| || ||
Sbjct 36225 CGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCCACACTCAACACCGGCTCGTT 36284
Query 1328 CCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAG-TGCGCGCAGATTGACAGCCGCA 1386
||| || || | |||| | || |||||| ||| |||||| || || ||||
Sbjct 36285 CCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACGCG-GCAGATCGATAGTCGCA 36343
Query 1387 CCGTGGAAGGCACCAACAAGCAGCAACTGCAAAAGTGGGTGGACGACTACGGCGAAGACA 1446
|| || |||||||||||| | | || | || ||| | |||||||| ||||
Sbjct 36344 ATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGGTCACCACCTACGGCGCGGACA 36403
Query 1447 GCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCC 1483
|||| |||||||||||||||||||||| || |||||
Sbjct 36404 GCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440
>seq551
Length=68878
Score = 91.5 bits (100), Expect = 4e-14
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872
||||||| | ||||||||||||||| | ||| ||||||||||||||| ||||||||||
Sbjct 2835 TGGTGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCC 2894
Query 2873 AACTGAGCTA 2882
||||||||||
Sbjct 2895 AACTGAGCTA 2904
>seq8280
Length=144189
Score = 87.8 bits (96), Expect = 4e-13
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872
||| ||| | ||||||| ||||||||||| || ||||||||||||||| ||||||||||
Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029
Query 2873 AACTGAGCTAA 2883
| |||||||||
Sbjct 26030 AGCTGAGCTAA 26040
>seq7352
Length=278960
Score = 84.2 bits (92), Expect = 5e-12
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872
||| ||| | ||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214
Query 2873 AACTGAGCTAA 2883
| |||||||||
Sbjct 263215 AGCTGAGCTAA 263225
>seq11405
Length=110570
Score = 82.4 bits (90), Expect = 2e-11
Identities = 141/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 31585 ACGGCGTTAACCAGTTGTGCTTCATAGCCAAGAGTTCCGTTTACAACGTGCGTCTTCTGT 31644
|||||| |||| || || |||||||| | || ||||| || | ||| ||||||||
Sbjct 79919 ACGGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGG 79978
Query 31645 GCAACAGCGAACGGGTTCATGCCCCATTGCGCCGCCTGCATGGTTACTGCCAGGCAGTCA 31704
|| || ||||| |||||||||||||| ||| | ||||| | | || | ||||||
Sbjct 79979 GCCACGGCGAAGGGGTTCATGCCCCACTGCATGGACTGCAGCGAGATGGCGAAGCAGTCG 80038
Query 31705 GAC-GGCTTACCTGCAAGATGAGCAGGAACGGTAGCTTTACTGCAGGCCATCAACTCAGC 31763
| ||| || || || || || ||||| | || | || |||||||| || ||
Sbjct 80039 CCCTTGCTGCCCCGC-AGGTGTTGGGGCACGGTCGTCTTGCCGCTGGCCATCAGTTCGGC 80097
Query 31764 GAAGCGCACCAGTTGATTCATG 31785
|| |||| |||| ||| ||||
Sbjct 80098 GATGCGCTCCAGGCGATCCATG 80119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123645085135668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |