Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq8995 246 4e-60 seq608 102 1e-16 >seq8995 Length=8301158 Score = 246 bits (272), Expect = 4e-60 Identities = 598/896 (67%), Gaps = 16/896 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | |||| || | |||| |||| || || || || ||||| || | Sbjct 6971361 CATCACTCCCATTCTCTGATTCTCGCTTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 6971419 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||||| |||||||||||||| ||||| ||||| | || | | | ||| | Sbjct 6971420 CCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGC 6971479 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATA 37048 | ||| || ||| ||||| || || || || ||||| | ||| | || || Sbjct 6971480 CCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA- 6971538 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || || || || | || || ||| || | |||||| | || Sbjct 6971539 -TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6971597 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA----TT 37164 |||| | || || | | | ||| || || | | | | | || | || Sbjct 6971598 TGCAT---TGACGATTATTTCCTTTACT-CTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6971653 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 | |||| | || | ||| ||||| || ||||| |||||||| || || | |||||| | Sbjct 6971654 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6971713 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 |||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||| | Sbjct 6971714 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6971773 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 | |||||||| || ||||| ||||| ||||| ||||| | |||| || | || | Sbjct 6971774 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTT 6971833 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || | |||| | |||||||||||| || ||||| || || | Sbjct 6971834 CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCT 6971893 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || || |||||||| | |||||| |||| | || ||||| ||||| || | Sbjct 6971894 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGA 6971953 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 ||||||||||||||| || || ||||| || || || || || ||||| ||||| || Sbjct 6971954 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAG 6972013 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 | || | |||| ||||| || | ||||| || | ||||||||||| ||||| ||| Sbjct 6972014 CCTC-GGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 6972072 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAAT 37643 ||||| |||||||||||||| || |||| ||||||| ||| || ||| | Sbjct 6972073 TCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGG 6972132 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCC 37703 || ||| | | ||| || || || | || || || ||| | |||||||| ||| Sbjct 6972133 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 6972192 Query 37704 AATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || ||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 6972193 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 129 bits (142), Expect = 7e-25 Identities = 311/464 (67%), Gaps = 14/464 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||| || || |||| |||| || || || || ||||| || | Sbjct 6968493 CATCACTCCCATTCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 6968551 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||||| |||||||||||||| ||||| ||||| | || | | | ||| | Sbjct 6968552 CCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGC 6968611 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT--TACACATTAGTTCATA 37048 | ||| || ||| ||||| || || || || ||||| | | || ||| | | Sbjct 6968612 CCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGC--A 6968669 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || || || || | || || ||| || | |||||| | || Sbjct 6968670 ATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6968729 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA----TATT 37164 ||| || || || | | | || ||| || | | | | | || | || Sbjct 6968730 TGCA---TTGACGATTATTTCCTTTAC-TCTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6968785 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 | |||| | || | ||| ||||| || ||||| |||||||| || || | |||||| | Sbjct 6968786 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6968845 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 |||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||| | Sbjct 6968846 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6968905 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 | |||||||| || ||||| ||||| ||||| ||||| | |||| Sbjct 6968906 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGT 6968949 >seq608 Length=3558542 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||| ||||| || | ||| ||||| | |||||||| | Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483 Query 37318 CTAC 37321 | || Sbjct 2088482 CCAC 2088479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592205303766360