Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 246 4e-60
seq608 102 1e-16
>seq8995
Length=8301158
Score = 246 bits (272), Expect = 4e-60
Identities = 598/896 (67%), Gaps = 16/896 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| ||||||||| | |||| || | |||| |||| || || || || ||||| || |
Sbjct 6971361 CATCACTCCCATTCTCTGATTCTCGCTTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 6971419
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990
| ||||| |||||||||||||| ||||| ||||| | || | | | ||| |
Sbjct 6971420 CCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGC 6971479
Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATA 37048
| ||| || ||| ||||| || || || || ||||| | ||| | || ||
Sbjct 6971480 CCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA- 6971538
Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108
|| || ||||| || || || || | || || ||| || | |||||| | ||
Sbjct 6971539 -TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6971597
Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA----TT 37164
|||| | || || | | | ||| || || | | | | | || | ||
Sbjct 6971598 TGCAT---TGACGATTATTTCCTTTACT-CTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6971653
Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224
| |||| | || | ||| ||||| || ||||| |||||||| || || | |||||| |
Sbjct 6971654 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6971713
Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284
|||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||| |
Sbjct 6971714 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6971773
Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344
| |||||||| || ||||| ||||| ||||| ||||| | |||| || | || |
Sbjct 6971774 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTT 6971833
Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404
| || | |||| | |||||||||||| || ||||| || || |
Sbjct 6971834 CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCT 6971893
Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464
|||| || || |||||||| | |||||| |||| | || ||||| ||||| || |
Sbjct 6971894 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGA 6971953
Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524
||||||||||||||| || || ||||| || || || || || ||||| ||||| ||
Sbjct 6971954 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAG 6972013
Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583
| || | |||| ||||| || | ||||| || | ||||||||||| ||||| |||
Sbjct 6972014 CCTC-GGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 6972072
Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAAT 37643
||||| |||||||||||||| || |||| ||||||| ||| || ||| |
Sbjct 6972073 TCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGG 6972132
Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCC 37703
|| ||| | | ||| || || || | || || || ||| | |||||||| |||
Sbjct 6972133 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 6972192
Query 37704 AATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759
|| ||||||||| ||||||||||| | || || ||||| || |||||
Sbjct 6972193 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 129 bits (142), Expect = 7e-25
Identities = 311/464 (67%), Gaps = 14/464 (3%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| ||||||||| | ||||| || || |||| |||| || || || || ||||| || |
Sbjct 6968493 CATCACTCCCATTCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 6968551
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990
| ||||| |||||||||||||| ||||| ||||| | || | | | ||| |
Sbjct 6968552 CCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGC 6968611
Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT--TACACATTAGTTCATA 37048
| ||| || ||| ||||| || || || || ||||| | | || ||| | |
Sbjct 6968612 CCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGC--A 6968669
Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108
|| || ||||| || || || || | || || ||| || | |||||| | ||
Sbjct 6968670 ATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAAC 6968729
Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA----TATT 37164
||| || || || | | | || ||| || | | | | | || | ||
Sbjct 6968730 TGCA---TTGACGATTATTTCCTTTAC-TCTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6968785
Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224
| |||| | || | ||| ||||| || ||||| |||||||| || || | |||||| |
Sbjct 6968786 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6968845
Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284
|||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||| |
Sbjct 6968846 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6968905
Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328
| |||||||| || ||||| ||||| ||||| ||||| | ||||
Sbjct 6968906 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGT 6968949
>seq608
Length=3558542
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | ||||| ||||| || | ||| ||||| | |||||||| |
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 37318 CTAC 37321
| ||
Sbjct 2088482 CCAC 2088479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592205303766360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |