Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq9470 136 3e-27
seq9538 111 1e-19
seq10734 102 7e-17
seq646 95.1 1e-14
seq9639 93.3 3e-14
seq10366 87.8 1e-12
seq6415 87.8 1e-12
seq4090 87.8 1e-12
>seq9470
Length=127963
Score = 136 bits (150), Expect = 3e-27
Identities = 212/303 (70%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 29764 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGG 29823
|| || ||||| |||||| | |||||| |||| | | || || || | |||
Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635
Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883
|||| ||| ||||| ||||||||||| || ||||| || || | || |||||| | ||
Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695
Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943
||| |||| || || || | |||| ||||||||| || || || ||||| || |
Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755
Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003
|| |||| | |||||| ||| | || || || | |||||| |||| | ||||| ||
Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815
Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063
| | ||||||||| || || |||||| | | | ||| ||||||||||| | |||
Sbjct 52816 AGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACG 52875
Query 30064 ATG 30066
|||
Sbjct 52876 ATG 52878
>seq9538
Length=646221
Score = 111 bits (122), Expect = 1e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883
|||| ||| ||||| ||||| ||||| || || || || |||| ||||| || || ||
Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010
Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943
|||| ||| ||||| || | ||| |||||||| || || || ||||| |||
Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950
Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003
||| | || | |||||||||||| || || ||| |||||| ||||| ||||| ||
Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890
Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT 30029
| | |||||| || || || |||||
Sbjct 486889 AGGCAGTGGCAGGGCGGCAGCGCCAT 486864
>seq10734
Length=9239
Score = 102 bits (112), Expect = 7e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888
||| || || ||||| ||||| || || || ||| | || |||||| | || ||||
Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784
Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948
||||| || || || | ||||||||||||||| || || || ||||| ||||| ||
Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724
Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGT 30008
| |||||| ||||| || ||||| ||||| |||||| ||||| ||| | |
Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664
Query 30009 GTGGCACGG 30017
|||||||||
Sbjct 1663 GTGGCACGG 1655
>seq646
Length=687
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883
|||| ||| ||||| || ||||| || || ||||| || || | || || ||||| ||
Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262
Query 29884 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940
|| ||||||| || || || | ||| |||||||| ||||| || ||||| |
Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319
Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000
| ||| |||| | |||||||||||| || || ||| || | | ||||| ||||||
Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379
Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCAT 30029
||| | ||| || || || || |||||
Sbjct 380 AACAGGCAGTGACAGGGCGGCAGCGCCAT 408
>seq9639
Length=103419
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940
|| |||| ||||| || || || | ||||||||||||||| ||||| || || ||
Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842
Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000
|||||| | | |||||| ||||| || ||||| |||||| |||||| |||||
Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902
Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060
| | || |||||| || || ||||| | || ||| |||||||||||
Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962
Query 30061 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 30094
||||||||||| | | || |||||| || |||
Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996
>seq10366
Length=3198051
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || ||||||||||||||||| || || ||||| || | ||
Sbjct 2452268 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATC 2452209
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| || | |||| ||||||| ||||| ||||||| ||| |||||||| ||
Sbjct 2452208 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2452149
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 2452148 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2452101
>seq6415
Length=247467
Score = 87.8 bits (96), Expect = 1e-12
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 29814 GTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCC 29873
||| | ||| |||| ||| ||||| || | ||||||||| ||||| ||||| || || ||
Sbjct 53547 GTGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGCC 53488
Query 29874 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 29933
| ||| | || | ||| || || || | |||| ||||||||| || || |||||
Sbjct 53487 GACGACCTTGGCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCC 53428
Query 29934 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTA 29993
| || ||| | | || |||||||| || |||| |||||| ||| |
Sbjct 53427 TAAGAACACGTCGGCGCTGCGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACGAA 53368
Query 29994 AAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053
||||| ||| | |||||| || || || |||||| | | | || |||||||||
Sbjct 53367 GAACTGGAACAGGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTTCCA 53308
Query 30054 GGC 30056
|||
Sbjct 53307 GGC 53305
>seq4090
Length=8080645
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 3526707 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3526766
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 3526767 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408542605773407
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |