Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq915 168 1e-36 seq14232 159 6e-34 seq9676 131 3e-25 seq9665 120 5e-22 seq10908 116 7e-21 >seq915 Length=843 Score = 168 bits (186), Expect = 1e-36 Identities = 277/397 (70%), Gaps = 17/397 (4%) Strand=Plus/Minus Query 22987 TCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTG 23046 || |||||||| | |||||||||||||| || ||||||||| ||||| || ||| Sbjct 584 TCGAAGAACAGCACCTGTGCGCAACCTTCACCGGCGTAGATCTTGGCCGGCAACGGCGTG 525 Query 23047 GTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTT 23106 || ||||| |||||||| || | |||||| |||||| ||||| | || |||||||| Sbjct 524 GTGTTGGAGAACTCCAGGGTCACGTAGCCTTCCCATTCCGGTTCGAAGGGAGTGACGTTG 465 Query 23107 ACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGC 23166 |||||||||||||| || || || || || ||||| |||||||| | || ||| Sbjct 464 ACGATGATGCCGCAGCGTGCGTAGGTGGACTTGCCCAGGCAGATGGTCAGGACACTGCGC 405 Query 23167 GGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAG 23225 || ||| ||||| ||| ||| ||||| ||||| ||| ||||| ||||| ||| Sbjct 404 GGGATGCGGAAGTATTCGACGGTGCGGGCCAGGGCGAAGGAGTTGGGCGGGATGATGCAG 345 Query 23226 GCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATC 23285 | | | || ||| || | | | | | || || || ||| ||||| ||||| Sbjct 344 ACATCGCCC--TTGAAA-----TCCACGAAGGATTTCTCATC---GAAGTTCTTGGGATC 295 Query 23286 GACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAAC------GAAT 23339 ||| | | | ||| | ||||||||| | |||||||||||| |||| | | || Sbjct 294 GACGATGGTGGAATTGATGTTGGTGAAGATCTTGAATTCGTTGGCGCAGCCGCGGGGGAT 235 Query 23340 ATCGTAGCCGTAGCTGGAAACACCGTAGGGAATGATC 23376 ||| ||||| ||| || ||||||| || |||| Sbjct 234 ATCTTAGCCATAGGACGAGGTGCCGTAGGAAACGATC 198 >seq14232 Length=72504 Score = 159 bits (176), Expect = 6e-34 Identities = 225/309 (73%), Gaps = 13/309 (4%) Strand=Plus/Plus Query 23020 GCGTAGATCAGTGCCGGGCTT-GGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078 ||||||||| || ||||| || |||||||||||||| ||||| || | ||||| Sbjct 58467 GCGTAGATCT-TGGCGGGCAGCGGCGTGGTATTGGAAAATTCCAGCGTCACATGGCCTTC 58525 Query 23079 CCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTT 23138 ||| | || ||||||||||||||||| || ||||||||||| || ||||| || ||||| Sbjct 58526 CCAGCCCGGCTCCAGCGGCGTGACGTTCACAATGATGCCGCAGCGGGCATAGGTGGATTT 58585 Query 23139 GCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAG 23198 ||| |||||||| || | ||||| ||||| | | ||| | ||| |||| || || Sbjct 58586 GCCAAGGCAGATCACCAGCACGTCGCGCGGCACGCGGAAATATTCGACCGTGCGGGCAAG 58645 Query 23199 TGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGA 23257 ||||| ||||| ||||||||||| ||| | | || | ||| || ||| || | Sbjct 58646 GGCGAAGCTGTTGGGCGGAATGATGCAGACGTCGGTC--TTG---CG---GTCG--ACAA 58695 Query 23258 AATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCT 23317 | ||| ||| |||| ||| |||||||| || ||| | | | |||||||| | || Sbjct 58696 AGCTGTTGGCGGCAAAATCCTTGGGATCGACCACGGCGCTGTCGACATTGGTGAAGATCT 58755 Query 23318 TGAATTCGT 23326 |||| |||| Sbjct 58756 TGAACTCGT 58764 >seq9676 Length=343241 Score = 131 bits (144), Expect = 3e-25 Identities = 263/389 (68%), Gaps = 11/389 (3%) Strand=Plus/Plus Query 22979 CATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGC 23038 |||| | |||||||||||| | ||| ||||||||||| || || ||| ||| || Sbjct 101932 CATCGGCTTCAAAGAACAGTACTTGCGCGCAACCTTCATTGGCATAAATCTTTGCAGGTA 101991 Query 23039 TTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCG 23098 || ||||| ||| || ||||| || | | |||| ||| || ||||| | ||||| Sbjct 101992 GCGGGGTGGTGTTGCTGAATTCCAGTGTGACATAACCTTCCCACTCAGGTTCAAACGGCG 102051 Query 23099 TGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATA 23158 ||||||| || |||||||||||||||||||| || ||||| || | ||| | | | | Sbjct 102052 TGACGTTCACAATGATGCCGCAACGCGCATAGGTGGATTTACCCAAGCATACAGTCAGCA 102111 Query 23159 CGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAA 23218 | | ||||| || ||||| ||| ||| ||||| ||||| ||| || |||| Sbjct 102112 CATTGCGCGGGATACGGAAGTATTCTACGGTGCGTGCCAAAGCGAATGAGTTGGGTGGAA 102171 Query 23219 TGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGT-GAAATTC 23277 |||| || || | | | | | || |||| | ||| |||||| Sbjct 102172 TGAT---------GCAGTAATCAGCATTCACCTCCAC-AAATGAGTTAGGGTCGAAATTT 102221 Query 23278 TTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGA 23337 || |||||||||| | | | || | || || || | ||| ||||| || ||| || Sbjct 102222 TTCGGATCGACAATGGTGCTGTTTAAATTAGTAAACAGCTTAAATTCTTTGGAGCAGCGG 102281 Query 23338 ATATCGTAGCCGTAGCTGGAAACACCGTA 23366 ||||| || |||||||||||| ||| || Sbjct 102282 ATATCATAACCGTAGCTGGAAGTACCATA 102310 >seq9665 Length=136677 Score = 120 bits (132), Expect = 5e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 ||| || |||||||||||||||| ||||| ||||| || |||||| || || || || Sbjct 124504 TTCACAAACTTCATCAGATTCAAAAAACAGCATTTGAGCAACACCTTCACCGGCATAAAT 124563 Query 23028 CAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGG 23087 | || || || ||||| |||||||| | || | |||| |||||| || Sbjct 124564 ACGCGCAGGTAAATTCGTCGTATTTGAAAACTCTAATGTCACATGACCTTCCCATTCAGG 124623 Query 23088 TTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCA 23147 ||| || ||||| || ||||| ||||| |||||||| ||||| |||||||| || ||||| Sbjct 124624 TTCAAGTGGCGTTACATTTACAATGATACCGCAACGTGCATAAGTCGATTTACCTAGGCA 124683 Query 23148 GATAACTAATACGTCACGCGGAAT 23171 ||| || || | ||| ||||| Sbjct 124684 GATCGTCAAAACATTACGTGGAAT 124707 >seq10908 Length=27074 Score = 116 bits (128), Expect = 7e-21 Identities = 249/370 (67%), Gaps = 13/370 (4%) Strand=Plus/Minus Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049 |||||||| || || || ||||| |||||||| ||||||| || ||||| Sbjct 16835 AAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGCGTGCCGGCAGCGGCGTGGTG 16776 Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109 ||| || ||||| || | ||||| ||| || || |||||||| || ||||| ||| Sbjct 16775 TTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCTCCAGCGGGGTCACGTTGACG 16716 Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169 ||||||||||| ||||| || || ||||| ||||| | || | ||| ||||| Sbjct 16715 ATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGG 16656 Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCT 23229 ||| ||||| ||| ||| |||| ||||| ||||| ||||| ||||| | Sbjct 16655 ATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGTTGGGCGGGATGATGCATTCA 16596 Query 23230 TGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGG--TGAAATTCTTTGGATCGA 23287 | |||| ||| | | ||||| || | ||| ||| | ||| ||||||| Sbjct 16595 TCGCCG------ACGATATCC---ACGAAGCTGCC--CGGATCGAAGTGCTTGGGATCGA 16547 Query 23288 CAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGC 23347 | | | || | ||||||||| |||||||| ||| ||| || | ||||||| Sbjct 16546 CGATGGTCGAGTTGATGTTGGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCGTAGC 16487 Query 23348 CGTAGCTGGA 23357 |||||||||| Sbjct 16486 CGTAGCTGGA 16477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897424639224720