Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq915 168 1e-36
seq14232 159 6e-34
seq9676 131 3e-25
seq9665 120 5e-22
seq10908 116 7e-21
>seq915
Length=843
Score = 168 bits (186), Expect = 1e-36
Identities = 277/397 (70%), Gaps = 17/397 (4%)
Strand=Plus/Minus
Query 22987 TCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTG 23046
|| |||||||| | |||||||||||||| || ||||||||| ||||| || |||
Sbjct 584 TCGAAGAACAGCACCTGTGCGCAACCTTCACCGGCGTAGATCTTGGCCGGCAACGGCGTG 525
Query 23047 GTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTT 23106
|| ||||| |||||||| || | |||||| |||||| ||||| | || ||||||||
Sbjct 524 GTGTTGGAGAACTCCAGGGTCACGTAGCCTTCCCATTCCGGTTCGAAGGGAGTGACGTTG 465
Query 23107 ACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGC 23166
|||||||||||||| || || || || || ||||| |||||||| | || |||
Sbjct 464 ACGATGATGCCGCAGCGTGCGTAGGTGGACTTGCCCAGGCAGATGGTCAGGACACTGCGC 405
Query 23167 GGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAG 23225
|| ||| ||||| ||| ||| ||||| ||||| ||| ||||| ||||| |||
Sbjct 404 GGGATGCGGAAGTATTCGACGGTGCGGGCCAGGGCGAAGGAGTTGGGCGGGATGATGCAG 345
Query 23226 GCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATC 23285
| | | || ||| || | | | | | || || || ||| ||||| |||||
Sbjct 344 ACATCGCCC--TTGAAA-----TCCACGAAGGATTTCTCATC---GAAGTTCTTGGGATC 295
Query 23286 GACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAAC------GAAT 23339
||| | | | ||| | ||||||||| | |||||||||||| |||| | | ||
Sbjct 294 GACGATGGTGGAATTGATGTTGGTGAAGATCTTGAATTCGTTGGCGCAGCCGCGGGGGAT 235
Query 23340 ATCGTAGCCGTAGCTGGAAACACCGTAGGGAATGATC 23376
||| ||||| ||| || ||||||| || ||||
Sbjct 234 ATCTTAGCCATAGGACGAGGTGCCGTAGGAAACGATC 198
>seq14232
Length=72504
Score = 159 bits (176), Expect = 6e-34
Identities = 225/309 (73%), Gaps = 13/309 (4%)
Strand=Plus/Plus
Query 23020 GCGTAGATCAGTGCCGGGCTT-GGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078
||||||||| || ||||| || |||||||||||||| ||||| || | |||||
Sbjct 58467 GCGTAGATCT-TGGCGGGCAGCGGCGTGGTATTGGAAAATTCCAGCGTCACATGGCCTTC 58525
Query 23079 CCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTT 23138
||| | || ||||||||||||||||| || ||||||||||| || ||||| || |||||
Sbjct 58526 CCAGCCCGGCTCCAGCGGCGTGACGTTCACAATGATGCCGCAGCGGGCATAGGTGGATTT 58585
Query 23139 GCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAG 23198
||| |||||||| || | ||||| ||||| | | ||| | ||| |||| || ||
Sbjct 58586 GCCAAGGCAGATCACCAGCACGTCGCGCGGCACGCGGAAATATTCGACCGTGCGGGCAAG 58645
Query 23199 TGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGA 23257
||||| ||||| ||||||||||| ||| | | || | ||| || ||| || |
Sbjct 58646 GGCGAAGCTGTTGGGCGGAATGATGCAGACGTCGGTC--TTG---CG---GTCG--ACAA 58695
Query 23258 AATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCT 23317
| ||| ||| |||| ||| |||||||| || ||| | | | |||||||| | ||
Sbjct 58696 AGCTGTTGGCGGCAAAATCCTTGGGATCGACCACGGCGCTGTCGACATTGGTGAAGATCT 58755
Query 23318 TGAATTCGT 23326
|||| ||||
Sbjct 58756 TGAACTCGT 58764
>seq9676
Length=343241
Score = 131 bits (144), Expect = 3e-25
Identities = 263/389 (68%), Gaps = 11/389 (3%)
Strand=Plus/Plus
Query 22979 CATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGC 23038
|||| | |||||||||||| | ||| ||||||||||| || || ||| ||| ||
Sbjct 101932 CATCGGCTTCAAAGAACAGTACTTGCGCGCAACCTTCATTGGCATAAATCTTTGCAGGTA 101991
Query 23039 TTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCG 23098
|| ||||| ||| || ||||| || | | |||| ||| || ||||| | |||||
Sbjct 101992 GCGGGGTGGTGTTGCTGAATTCCAGTGTGACATAACCTTCCCACTCAGGTTCAAACGGCG 102051
Query 23099 TGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATA 23158
||||||| || |||||||||||||||||||| || ||||| || | ||| | | | |
Sbjct 102052 TGACGTTCACAATGATGCCGCAACGCGCATAGGTGGATTTACCCAAGCATACAGTCAGCA 102111
Query 23159 CGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAA 23218
| | ||||| || ||||| ||| ||| ||||| ||||| ||| || ||||
Sbjct 102112 CATTGCGCGGGATACGGAAGTATTCTACGGTGCGTGCCAAAGCGAATGAGTTGGGTGGAA 102171
Query 23219 TGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGT-GAAATTC 23277
|||| || || | | | | | || |||| | ||| ||||||
Sbjct 102172 TGAT---------GCAGTAATCAGCATTCACCTCCAC-AAATGAGTTAGGGTCGAAATTT 102221
Query 23278 TTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGA 23337
|| |||||||||| | | | || | || || || | ||| ||||| || ||| ||
Sbjct 102222 TTCGGATCGACAATGGTGCTGTTTAAATTAGTAAACAGCTTAAATTCTTTGGAGCAGCGG 102281
Query 23338 ATATCGTAGCCGTAGCTGGAAACACCGTA 23366
||||| || |||||||||||| ||| ||
Sbjct 102282 ATATCATAACCGTAGCTGGAAGTACCATA 102310
>seq9665
Length=136677
Score = 120 bits (132), Expect = 5e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027
||| || |||||||||||||||| ||||| ||||| || |||||| || || || ||
Sbjct 124504 TTCACAAACTTCATCAGATTCAAAAAACAGCATTTGAGCAACACCTTCACCGGCATAAAT 124563
Query 23028 CAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGG 23087
| || || || ||||| |||||||| | || | |||| |||||| ||
Sbjct 124564 ACGCGCAGGTAAATTCGTCGTATTTGAAAACTCTAATGTCACATGACCTTCCCATTCAGG 124623
Query 23088 TTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCA 23147
||| || ||||| || ||||| ||||| |||||||| ||||| |||||||| || |||||
Sbjct 124624 TTCAAGTGGCGTTACATTTACAATGATACCGCAACGTGCATAAGTCGATTTACCTAGGCA 124683
Query 23148 GATAACTAATACGTCACGCGGAAT 23171
||| || || | ||| |||||
Sbjct 124684 GATCGTCAAAACATTACGTGGAAT 124707
>seq10908
Length=27074
Score = 116 bits (128), Expect = 7e-21
Identities = 249/370 (67%), Gaps = 13/370 (4%)
Strand=Plus/Minus
Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049
|||||||| || || || ||||| |||||||| ||||||| || |||||
Sbjct 16835 AAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGCGTGCCGGCAGCGGCGTGGTG 16776
Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109
||| || ||||| || | ||||| ||| || || |||||||| || ||||| |||
Sbjct 16775 TTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCTCCAGCGGGGTCACGTTGACG 16716
Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169
||||||||||| ||||| || || ||||| ||||| | || | ||| |||||
Sbjct 16715 ATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGG 16656
Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCT 23229
||| ||||| ||| ||| |||| ||||| ||||| ||||| ||||| |
Sbjct 16655 ATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGTTGGGCGGGATGATGCATTCA 16596
Query 23230 TGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGG--TGAAATTCTTTGGATCGA 23287
| |||| ||| | | ||||| || | ||| ||| | ||| |||||||
Sbjct 16595 TCGCCG------ACGATATCC---ACGAAGCTGCC--CGGATCGAAGTGCTTGGGATCGA 16547
Query 23288 CAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGC 23347
| | | || | ||||||||| |||||||| ||| ||| || | |||||||
Sbjct 16546 CGATGGTCGAGTTGATGTTGGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCGTAGC 16487
Query 23348 CGTAGCTGGA 23357
||||||||||
Sbjct 16486 CGTAGCTGGA 16477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897424639224720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |