Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq12849 89.7 1e-13 seq11415 89.7 1e-13 >seq12849 Length=3269951 Score = 89.7 bits (98), Expect = 1e-13 Identities = 187/274 (68%), Gaps = 16/274 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || | || | Sbjct 3072003 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAACGTC----A 3072058 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || ||| |||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 3072059 TAGATGTAGGAGCTTGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 3072118 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| ||||| ||| | |||| Sbjct 3072119 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCAAATTGCACAGCTCATTT 3072178 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| || ||||| || | | Sbjct 3072179 GTG-AATGGATATTTT---ACCCA--GAAATAGAGGAAGTTTAAATTTTAGATGACACTG 3072232 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 3072233 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 3072266 >seq11415 Length=1221423 Score = 89.7 bits (98), Expect = 1e-13 Identities = 187/274 (68%), Gaps = 16/274 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || | || | Sbjct 353528 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAACGTC----A 353583 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 353584 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 353643 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || || | | || |||||| | ||||| ||| | |||| Sbjct 353644 TTAATTTTGGCAAAGAGAAGTTGGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 353703 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGATTCGG 1191 ||| | || | |||| | ||| |||||| ||| || ||||| || | | Sbjct 353704 GTG-CACGGATATTTT---ACCCA--GAAATAGAGGAAGTTTTAATTTTAGATGACACTG 353757 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 353758 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 353791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138656800176204