Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq12849 89.7 1e-13
seq11415 89.7 1e-13
>seq12849
Length=3269951
Score = 89.7 bits (98), Expect = 1e-13
Identities = 187/274 (68%), Gaps = 16/274 (6%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| | |||||| | || || || || || | || |
Sbjct 3072003 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAACGTC----A 3072058
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || ||| |||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 3072059 TAGATGTAGGAGCTTGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 3072118
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || ||| | | || |||||| ||||| ||| | ||||
Sbjct 3072119 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCAAATTGCACAGCTCATTT 3072178
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGATTCGG 1191
||| || || | |||| | ||| |||||| ||| || ||||| || | |
Sbjct 3072179 GTG-AATGGATATTTT---ACCCA--GAAATAGAGGAAGTTTAAATTTTAGATGACACTG 3072232
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225
|||||||||| | ||| ||||| || || |||||
Sbjct 3072233 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 3072266
>seq11415
Length=1221423
Score = 89.7 bits (98), Expect = 1e-13
Identities = 187/274 (68%), Gaps = 16/274 (6%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| | |||||| | || || || || || | || |
Sbjct 353528 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAACGTC----A 353583
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 353584 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 353643
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || || | | || |||||| | ||||| ||| | ||||
Sbjct 353644 TTAATTTTGGCAAAGAGAAGTTGGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 353703
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGATTCGG 1191
||| | || | |||| | ||| |||||| ||| || ||||| || | |
Sbjct 353704 GTG-CACGGATATTTT---ACCCA--GAAATAGAGGAAGTTTTAATTTTAGATGACACTG 353757
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225
|||||||||| | ||| ||||| || || |||||
Sbjct 353758 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 353791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138656800176204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |