Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_017984.1
Length=46387
Score E
Sequences producing significant alignments: (Bits) Value
seq6169 156 1e-33
seq8151 136 1e-27
seq8225 134 4e-27
seq9034 120 9e-23
seq8226 118 3e-22
seq9798 86.0 2e-12
>seq6169
Length=202695
Score = 156 bits (172), Expect = 1e-33
Identities = 263/380 (69%), Gaps = 7/380 (2%)
Strand=Plus/Plus
Query 31943 GCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAAC--CATCTACCCAA 32000
|| ||||| |||||||| || || |||||||| || || ||||| || ||
Sbjct 2894 GCGTATGACGATGGTGTAGGTGTTTGGACTATTGGTTATGGCACAACTGCAATTA----- 2948
Query 32001 ATGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAACAAGCAAAAACCTACTTCA 32060
||||| |||||||||||| ||||| || || |||||||||| || ||||| |
Sbjct 2949 ATGGTGTCGCAGTTAAGAAAGGTGATACTTGCACTGCTGAACAAGCTAAGTCCTACATGG 3008
Query 32061 AACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTC 32120
|| |||||| || |||||| || ||||||| || |||||||||||| | | |
Sbjct 3009 CTCAAGATTTAAAGAAATTTGAATCTGCTGTAAATACTTCGGTTAAAGTTCCATTAAACC 3068
Query 32121 AGAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAA 32180
| ||||| || |||||| | || ||| |||| |||||||| ||| | ||||| ||||||
Sbjct 3069 AAAATCAGTTCGATGCTTTGGTATCATTGACTTACAACATTGGCACTGGTGCATTTAAAG 3128
Query 32181 ATTCAACTTTACTCAAGCTTCTTAACAATGGCGATTATCAAGGTGCTGCCGATCAATTCC 32240
| ||||| ||||||| | || | |||||| |||| ||||| | ||||||
Sbjct 3129 ACTCAACACTACTCAAAAAGTTAAATGCTAAAGATTATAAAGGCGCTGCAGCTCAATTTG 3188
Query 32241 CAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGCTGCTG 32300
|||||| |||| ||||| ||| | |||| | || || || |||||| |
Sbjct 3189 ATCGATGGAACAAAGGAGGTGGCAAGGTTATGCAAGGGCTTGTGAACCGTCGTGCTAAAG 3248
Query 32301 AAAGAAGTTTATTTCTAAAG 32320
|| | | |||||| ||||
Sbjct 3249 AACGTAAATTATTTGAAAAG 3268
>seq8151
Length=131251
Score = 136 bits (150), Expect = 1e-27
Identities = 247/354 (70%), Gaps = 8/354 (2%)
Strand=Plus/Minus
Query 31913 ATTTCTACTTTTGAAGGAACTAGA--TTAACTGCATATGATGATGGTGTTGGCGTGTGGA 31970
|||| | |||||| ||| |||| |||| || ||||||||||||||||| ||||| |
Sbjct 107581 ATTTGTGGTTTTGAGGGAT-TAGAGCTTAAA-GCTTATGATGATGGTGTTGGTGTGTGTA 107524
Query 31971 CTATCGGCATAGGTACAACCATCTACCCAAATGGTACAAAAGTTAAGAAAGGCGATACAT 32030
| ||||| || ||||| || ||||| |||| | | ||| || | || ||||| |
Sbjct 107523 CCATCGGTTATGGAACAACGATTTACCCGCATGGAAAAGCTGTTCAGTATGGTGATACTT 107464
Query 32031 GTACATCTGAACAAGCAAAAACCTACTTCAAACATGA-TTTAGTTAAG-TTTGAAAATGT 32088
|||| |||||||||||||| ||| | || |||| |||| | | ||||| | |
Sbjct 107463 GTACCATTGAACAAGCAAAAAACTATATGCAATATGACCTTAG--ACGTTTTGAGCAAGC 107406
Query 32089 TGTAAATGAATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACT 32148
|||| || | || || || || | | ||| ||||| |||||||| | || ||| |
Sbjct 107405 AGTAACTGCTGCTGTAAATGTGCCGTTAAATCAAAATCAGTTTGATGCGTTGGTTTCATT 107346
Query 32149 GACCTACAACATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAAGCTTCTTAACAA 32208
|| ||| ||||| || |||||||||||||||||||||||| | || | | |||
Sbjct 107345 GAGCTATAACATTGGTATTGGTGCTTTTAAAAATTCAACTTTATTAAAATTATTGAACGC 107286
Query 32209 TGGCGATTATCAAGGTGCTGCCGATCAATTCCCAGCATGGAAAAAAGCTGGTGG 32262
|||||||| | ||| |||||||| | |||| ||||| |||||
Sbjct 107285 CTCTGATTATCACGCTGCCAGTGATCAATTTGATGTTTGGATCAAAGCAGGTGG 107232
>seq8225
Length=74308
Score = 134 bits (148), Expect = 4e-27
Identities = 295/434 (68%), Gaps = 16/434 (4%)
Strand=Plus/Plus
Query 31889 ACAAGTGATACTGGCATCAATCTAATTTCTACTTTTGAAGGAACTAGATTAACTGCATAT 31948
|||||| | | || ||||||||||| |||||||| | | |||| || |||
Sbjct 6 ACAAGTAACTCAGGAATCAATCTAATCAAAGGCTTTGAAGGTAAACGTTTAAAAGCTTAT 65
Query 31949 GATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAATGGTACA 32008
|| ||||| ||||| || ||||| || || | || |||| | ||||| |||||| |
Sbjct 66 GACGATGGCGTTGGTGTTTGGACCATTGGATTTGGCACAATTAAATACCCGAATGGTGTA 125
Query 32009 AAAGTTAAGAAAGGCGATACATGTAC---ATCTGAACAAGCAAAAACCTA-CTTCAAACA 32064
||||| ||||||||| ||| || |||| |||||| || || |||| | |
Sbjct 126 CGTGTTAAAAAAGGCGATGTATGCACTGAATCT---CAAGCAGAACAATATCTTCGTA-A 181
Query 32065 TGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTCAGAA 32124
|||||| ||| |||||||| | | | ||| || || ||||| || |||| ||| ||
Sbjct 182 TGATTTGGTTGTATTTGAAAACGCTATCAATCGATTGGTGAAAGTACCTCTTAATCAAAA 241
Query 32125 TCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAAATTC 32184
||||| |||||| ||| ||| | || || ||| | || ||| | ||| || ||
Sbjct 242 CCAATTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAGCAAATC 301
Query 32185 AACTTTACT---CAAGCTTCTTAACAATGGCGATTATCAAGGTGCTGCCGATCAATTCCC 32241
|||| | || ||||| | ||| || ||| |||||||||| | | |||| ||
Sbjct 302 AACTCTGCTTAAAAAGCTAAATGCCAA---AGACTATAAAGGTGCTGCAGCTGAATTTCC 358
Query 32242 AGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGCTGCTGA 32301
|||||| ||||||||||| || || | | || ||||||| || || |||||
Sbjct 359 TAAATGGAACAAAGCTGGTGGGCGTGTCTTGGCTGGACTAGTTAAACGTCGCAAAGCTGA 418
Query 32302 AA-GAAGTTTATTT 32314
|| | || ||||||
Sbjct 419 AATGGAG-TTATTT 431
>seq9034
Length=15118
Score = 120 bits (132), Expect = 9e-23
Identities = 275/406 (68%), Gaps = 16/406 (4%)
Strand=Plus/Minus
Query 31922 TTTGAAGGAACTAGATTAACTGCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATA 31981
|||||||| | | || | || ||||| |||||||| ||| | ||||| || || |
Sbjct 10288 TTTGAAGGTAAACGCTTGAAAGCTTATGACGATGGTGTGGGCATTTGGACCATTGGATTT 10229
Query 31982 GGTACAACCATCTACCCAAATGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAA 32041
|| |||| || ||||| || ||| || || ||||| |||||||| || ||||
Sbjct 10228 GGCACAATCAAATACCCTAACGGTGTGCGTGTAAAAAAAGGTGATACATGCAC---TGAA 10172
Query 32042 ---CAAGCAAAAACCTA-CTTCAAACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGA 32097
|||||| || || |||| | |||| ||||| |||||||||| | | |||
Sbjct 10171 TCTCAAGCAGAAGAATATCTTCGTA-ATGACCTAGTTGTATTTGAAAATGCTATCAATCG 10113
Query 32098 ATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACTGACCTACAA 32157
| || || ||||| || | || || ||||| |||||| ||| ||| | ||||||||
Sbjct 10112 CTTGGTGAAGGTTCCGCTCAACCAAAACCAATTCGATGCTTTAGCCTCATTTACCTACAA 10053
Query 32158 CATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAAGCTTCTTAACAATGGC---GA 32214
| | ||| ||| | ||| || |||||| | || || || ||||| | ||
Sbjct 10052 CTTGGGCGAAGGCAATCTTAGTAAATCAACTCTGCTTAAAAAGCT---CAATGCCAAAGA 9996
Query 32215 TTATCAAGGTGCTGCCGATCAATTCCCAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGA 32274
|| |||||||||| | |||| ||| ||||| || ||||||||||| ||| | |
Sbjct 9995 CTACAAAGGTGCTGCTGCCGAATTTCCAAAGTGGAATAAGGCTGGTGGTCGTGTTTTGGC 9936
Query 32275 AGGTTTAGTTAAGCGCCGTGCTGCTGAAA-GAAGTTTATTTCTAAA 32319
|| | || || || || ||||||| | |||| |||||||||
Sbjct 9935 TGGACTGGTGAAACGTCGCAAAGCTGAAATGGAGTT-ATTTCTAAA 9891
>seq8226
Length=5263
Score = 118 bits (130), Expect = 3e-22
Identities = 298/445 (67%), Gaps = 16/445 (4%)
Strand=Plus/Plus
Query 31883 ATGACCACAAGTGATACTGGCATCAATCTAATTTCTACTTTTGAAGGAACTAGATTAACT 31942
|||| |||||| | | || ||||||||||| ||| || || | | || |
Sbjct 1129 ATGAAAACAAGTAACTCAGGAATCAATCTAATCAAAGGTTTCGAGGGTAAACGCTTGAAA 1188
Query 31943 GCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAAT 32002
|| ||||| |||||||| ||| | ||||| || || | || |||| | || || |||
Sbjct 1189 GCCTATGACGATGGTGTGGGCATTTGGACCATTGGATTTGGCACAATTAAATATCCGAAT 1248
Query 32003 GGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAA---CAAGCAAAAACCTA-CTT 32058
||| || || ||||| |||||||| || |||| |||||| || || |||
Sbjct 1249 GGTGTGCGTGTCAAAAAAGGGGATACATGCAC---TGAATCTCAAGCAGAACAATATCTT 1305
Query 32059 CAAACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAG 32118
| | |||||||||| |||||||| | | | ||| | || ||||| ||||| |
Sbjct 1306 CGCA-ATGATTTAGTAGTATTTGAAAACGCTATCAATCGTTTGGTGAAAGTGCCACTCAA 1364
Query 32119 TCAGAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAA 32178
||| || ||||| |||||| ||| ||| | || || ||| | || ||| | |||
Sbjct 1365 TCAAAACCAATTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAG 1424
Query 32179 AAATTCAACTTTACTCAAGCTTCTTAACAATGGC---GATTATCAAGGTGCTGCCGATCA 32235
|| |||||| | || || || || || | || ||| |||||||||| | | |
Sbjct 1425 CAAATCAACTCTGCTTAAAAAGCTAAA---TGCCAAAGACTATAAAGGTGCTGCAGCTGA 1481
Query 32236 ATTCCCAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGC 32295
||| || |||||| |||||||||||||| || | | ||| | || || || ||
Sbjct 1482 ATTTCCTAAATGGAACAAAGCTGGTGGTCGCGTCTTGGCTGGTCTGGTAAAACGTCGCAA 1541
Query 32296 TGCTGAAA-GAAGTTTATTTCTAAA 32319
||||||| | || |||||| ||||
Sbjct 1542 AGCTGAAATGGAG-TTATTTTTAAA 1565
>seq9798
Length=43688
Score = 86.0 bits (94), Expect = 2e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 41828 CAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAACAAGATGCCA 41887
||||||||||||| | |||||||||||| ||||| ||| ||||| ||||||||
Sbjct 22589 CAGATAAGCGCCCTAAGATGAGTGATTTACGTGATAGCGGCGGCATCGAGCAAGATGCAG 22648
Query 41888 ATACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTAAAGATATTGGGA 41947
| || || |||| ||||| ||||||||||| || | | | | ||| |||| || |
Sbjct 22649 ACACCATCATATTCATTTACCGTGATGAGGTATATAGCCTAGATAGTGCTGATAAAGGTA 22708
Query 41948 TTGCTGAAATTATTG 41962
||| || |||||||
Sbjct 22709 CTGCCGAGATTATTG 22723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148290277155542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |