Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq6169 156 1e-33 seq8151 136 1e-27 seq8225 134 4e-27 seq9034 120 9e-23 seq8226 118 3e-22 seq9798 86.0 2e-12 >seq6169 Length=202695 Score = 156 bits (172), Expect = 1e-33 Identities = 263/380 (69%), Gaps = 7/380 (2%) Strand=Plus/Plus Query 31943 GCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAAC--CATCTACCCAA 32000 || ||||| |||||||| || || |||||||| || || ||||| || || Sbjct 2894 GCGTATGACGATGGTGTAGGTGTTTGGACTATTGGTTATGGCACAACTGCAATTA----- 2948 Query 32001 ATGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAACAAGCAAAAACCTACTTCA 32060 ||||| |||||||||||| ||||| || || |||||||||| || ||||| | Sbjct 2949 ATGGTGTCGCAGTTAAGAAAGGTGATACTTGCACTGCTGAACAAGCTAAGTCCTACATGG 3008 Query 32061 AACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTC 32120 || |||||| || |||||| || ||||||| || |||||||||||| | | | Sbjct 3009 CTCAAGATTTAAAGAAATTTGAATCTGCTGTAAATACTTCGGTTAAAGTTCCATTAAACC 3068 Query 32121 AGAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAA 32180 | ||||| || |||||| | || ||| |||| |||||||| ||| | ||||| |||||| Sbjct 3069 AAAATCAGTTCGATGCTTTGGTATCATTGACTTACAACATTGGCACTGGTGCATTTAAAG 3128 Query 32181 ATTCAACTTTACTCAAGCTTCTTAACAATGGCGATTATCAAGGTGCTGCCGATCAATTCC 32240 | ||||| ||||||| | || | |||||| |||| ||||| | |||||| Sbjct 3129 ACTCAACACTACTCAAAAAGTTAAATGCTAAAGATTATAAAGGCGCTGCAGCTCAATTTG 3188 Query 32241 CAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGCTGCTG 32300 |||||| |||| ||||| ||| | |||| | || || || |||||| | Sbjct 3189 ATCGATGGAACAAAGGAGGTGGCAAGGTTATGCAAGGGCTTGTGAACCGTCGTGCTAAAG 3248 Query 32301 AAAGAAGTTTATTTCTAAAG 32320 || | | |||||| |||| Sbjct 3249 AACGTAAATTATTTGAAAAG 3268 >seq8151 Length=131251 Score = 136 bits (150), Expect = 1e-27 Identities = 247/354 (70%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 31913 ATTTCTACTTTTGAAGGAACTAGA--TTAACTGCATATGATGATGGTGTTGGCGTGTGGA 31970 |||| | |||||| ||| |||| |||| || ||||||||||||||||| ||||| | Sbjct 107581 ATTTGTGGTTTTGAGGGAT-TAGAGCTTAAA-GCTTATGATGATGGTGTTGGTGTGTGTA 107524 Query 31971 CTATCGGCATAGGTACAACCATCTACCCAAATGGTACAAAAGTTAAGAAAGGCGATACAT 32030 | ||||| || ||||| || ||||| |||| | | ||| || | || ||||| | Sbjct 107523 CCATCGGTTATGGAACAACGATTTACCCGCATGGAAAAGCTGTTCAGTATGGTGATACTT 107464 Query 32031 GTACATCTGAACAAGCAAAAACCTACTTCAAACATGA-TTTAGTTAAG-TTTGAAAATGT 32088 |||| |||||||||||||| ||| | || |||| |||| | | ||||| | | Sbjct 107463 GTACCATTGAACAAGCAAAAAACTATATGCAATATGACCTTAG--ACGTTTTGAGCAAGC 107406 Query 32089 TGTAAATGAATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACT 32148 |||| || | || || || || | | ||| ||||| |||||||| | || ||| | Sbjct 107405 AGTAACTGCTGCTGTAAATGTGCCGTTAAATCAAAATCAGTTTGATGCGTTGGTTTCATT 107346 Query 32149 GACCTACAACATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAAGCTTCTTAACAA 32208 || ||| ||||| || |||||||||||||||||||||||| | || | | ||| Sbjct 107345 GAGCTATAACATTGGTATTGGTGCTTTTAAAAATTCAACTTTATTAAAATTATTGAACGC 107286 Query 32209 TGGCGATTATCAAGGTGCTGCCGATCAATTCCCAGCATGGAAAAAAGCTGGTGG 32262 |||||||| | ||| |||||||| | |||| ||||| ||||| Sbjct 107285 CTCTGATTATCACGCTGCCAGTGATCAATTTGATGTTTGGATCAAAGCAGGTGG 107232 >seq8225 Length=74308 Score = 134 bits (148), Expect = 4e-27 Identities = 295/434 (68%), Gaps = 16/434 (4%) Strand=Plus/Plus Query 31889 ACAAGTGATACTGGCATCAATCTAATTTCTACTTTTGAAGGAACTAGATTAACTGCATAT 31948 |||||| | | || ||||||||||| |||||||| | | |||| || ||| Sbjct 6 ACAAGTAACTCAGGAATCAATCTAATCAAAGGCTTTGAAGGTAAACGTTTAAAAGCTTAT 65 Query 31949 GATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAATGGTACA 32008 || ||||| ||||| || ||||| || || | || |||| | ||||| |||||| | Sbjct 66 GACGATGGCGTTGGTGTTTGGACCATTGGATTTGGCACAATTAAATACCCGAATGGTGTA 125 Query 32009 AAAGTTAAGAAAGGCGATACATGTAC---ATCTGAACAAGCAAAAACCTA-CTTCAAACA 32064 ||||| ||||||||| ||| || |||| |||||| || || |||| | | Sbjct 126 CGTGTTAAAAAAGGCGATGTATGCACTGAATCT---CAAGCAGAACAATATCTTCGTA-A 181 Query 32065 TGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTCAGAA 32124 |||||| ||| |||||||| | | | ||| || || ||||| || |||| ||| || Sbjct 182 TGATTTGGTTGTATTTGAAAACGCTATCAATCGATTGGTGAAAGTACCTCTTAATCAAAA 241 Query 32125 TCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAAATTC 32184 ||||| |||||| ||| ||| | || || ||| | || ||| | ||| || || Sbjct 242 CCAATTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAGCAAATC 301 Query 32185 AACTTTACT---CAAGCTTCTTAACAATGGCGATTATCAAGGTGCTGCCGATCAATTCCC 32241 |||| | || ||||| | ||| || ||| |||||||||| | | |||| || Sbjct 302 AACTCTGCTTAAAAAGCTAAATGCCAA---AGACTATAAAGGTGCTGCAGCTGAATTTCC 358 Query 32242 AGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGCTGCTGA 32301 |||||| ||||||||||| || || | | || ||||||| || || ||||| Sbjct 359 TAAATGGAACAAAGCTGGTGGGCGTGTCTTGGCTGGACTAGTTAAACGTCGCAAAGCTGA 418 Query 32302 AA-GAAGTTTATTT 32314 || | || |||||| Sbjct 419 AATGGAG-TTATTT 431 >seq9034 Length=15118 Score = 120 bits (132), Expect = 9e-23 Identities = 275/406 (68%), Gaps = 16/406 (4%) Strand=Plus/Minus Query 31922 TTTGAAGGAACTAGATTAACTGCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATA 31981 |||||||| | | || | || ||||| |||||||| ||| | ||||| || || | Sbjct 10288 TTTGAAGGTAAACGCTTGAAAGCTTATGACGATGGTGTGGGCATTTGGACCATTGGATTT 10229 Query 31982 GGTACAACCATCTACCCAAATGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAA 32041 || |||| || ||||| || ||| || || ||||| |||||||| || |||| Sbjct 10228 GGCACAATCAAATACCCTAACGGTGTGCGTGTAAAAAAAGGTGATACATGCAC---TGAA 10172 Query 32042 ---CAAGCAAAAACCTA-CTTCAAACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGA 32097 |||||| || || |||| | |||| ||||| |||||||||| | | ||| Sbjct 10171 TCTCAAGCAGAAGAATATCTTCGTA-ATGACCTAGTTGTATTTGAAAATGCTATCAATCG 10113 Query 32098 ATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACTGACCTACAA 32157 | || || ||||| || | || || ||||| |||||| ||| ||| | |||||||| Sbjct 10112 CTTGGTGAAGGTTCCGCTCAACCAAAACCAATTCGATGCTTTAGCCTCATTTACCTACAA 10053 Query 32158 CATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAAGCTTCTTAACAATGGC---GA 32214 | | ||| ||| | ||| || |||||| | || || || ||||| | || Sbjct 10052 CTTGGGCGAAGGCAATCTTAGTAAATCAACTCTGCTTAAAAAGCT---CAATGCCAAAGA 9996 Query 32215 TTATCAAGGTGCTGCCGATCAATTCCCAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGA 32274 || |||||||||| | |||| ||| ||||| || ||||||||||| ||| | | Sbjct 9995 CTACAAAGGTGCTGCTGCCGAATTTCCAAAGTGGAATAAGGCTGGTGGTCGTGTTTTGGC 9936 Query 32275 AGGTTTAGTTAAGCGCCGTGCTGCTGAAA-GAAGTTTATTTCTAAA 32319 || | || || || || ||||||| | |||| ||||||||| Sbjct 9935 TGGACTGGTGAAACGTCGCAAAGCTGAAATGGAGTT-ATTTCTAAA 9891 >seq8226 Length=5263 Score = 118 bits (130), Expect = 3e-22 Identities = 298/445 (67%), Gaps = 16/445 (4%) Strand=Plus/Plus Query 31883 ATGACCACAAGTGATACTGGCATCAATCTAATTTCTACTTTTGAAGGAACTAGATTAACT 31942 |||| |||||| | | || ||||||||||| ||| || || | | || | Sbjct 1129 ATGAAAACAAGTAACTCAGGAATCAATCTAATCAAAGGTTTCGAGGGTAAACGCTTGAAA 1188 Query 31943 GCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAAT 32002 || ||||| |||||||| ||| | ||||| || || | || |||| | || || ||| Sbjct 1189 GCCTATGACGATGGTGTGGGCATTTGGACCATTGGATTTGGCACAATTAAATATCCGAAT 1248 Query 32003 GGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAA---CAAGCAAAAACCTA-CTT 32058 ||| || || ||||| |||||||| || |||| |||||| || || ||| Sbjct 1249 GGTGTGCGTGTCAAAAAAGGGGATACATGCAC---TGAATCTCAAGCAGAACAATATCTT 1305 Query 32059 CAAACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAG 32118 | | |||||||||| |||||||| | | | ||| | || ||||| ||||| | Sbjct 1306 CGCA-ATGATTTAGTAGTATTTGAAAACGCTATCAATCGTTTGGTGAAAGTGCCACTCAA 1364 Query 32119 TCAGAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAA 32178 ||| || ||||| |||||| ||| ||| | || || ||| | || ||| | ||| Sbjct 1365 TCAAAACCAATTCGATGCTTTAGCTTCATTCACTTATAACTTGGGTGAAGGCAATCTTAG 1424 Query 32179 AAATTCAACTTTACTCAAGCTTCTTAACAATGGC---GATTATCAAGGTGCTGCCGATCA 32235 || |||||| | || || || || || | || ||| |||||||||| | | | Sbjct 1425 CAAATCAACTCTGCTTAAAAAGCTAAA---TGCCAAAGACTATAAAGGTGCTGCAGCTGA 1481 Query 32236 ATTCCCAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTGAAGGTTTAGTTAAGCGCCGTGC 32295 ||| || |||||| |||||||||||||| || | | ||| | || || || || Sbjct 1482 ATTTCCTAAATGGAACAAAGCTGGTGGTCGCGTCTTGGCTGGTCTGGTAAAACGTCGCAA 1541 Query 32296 TGCTGAAA-GAAGTTTATTTCTAAA 32319 ||||||| | || |||||| |||| Sbjct 1542 AGCTGAAATGGAG-TTATTTTTAAA 1565 >seq9798 Length=43688 Score = 86.0 bits (94), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41828 CAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAACAAGATGCCA 41887 ||||||||||||| | |||||||||||| ||||| ||| ||||| |||||||| Sbjct 22589 CAGATAAGCGCCCTAAGATGAGTGATTTACGTGATAGCGGCGGCATCGAGCAAGATGCAG 22648 Query 41888 ATACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTAAAGATATTGGGA 41947 | || || |||| ||||| ||||||||||| || | | | | ||| |||| || | Sbjct 22649 ACACCATCATATTCATTTACCGTGATGAGGTATATAGCCTAGATAGTGCTGATAAAGGTA 22708 Query 41948 TTGCTGAAATTATTG 41962 ||| || ||||||| Sbjct 22709 CTGCCGAGATTATTG 22723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148290277155542