Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq8225 143 3e-29 seq6169 136 4e-27 seq7832 118 1e-21 seq8226 116 4e-21 seq10130 91.5 2e-13 >seq8225 Length=74308 Score = 143 bits (158), Expect = 3e-29 Identities = 238/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 11060 CTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTC 11119 |||| |||||| ||||| |||| || |||||||| || ||||| | ||| Sbjct 372 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 313 Query 11120 TCAATAAAGTTGAATTCGCAAA---TGCCGTTTCGCCAATATTGTACATTAATGAAACTA 11176 | | | |||||| || || || |||| ||| || | || || | |||||| ||| Sbjct 312 TAAGCAGAGTTGATTT-GCTAAGATTGCC--TTCACCCAAGTTATAAGTGAATGAAGCTA 256 Query 11177 AAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAGCAGATACAA 11236 ||||||| ||||| |||||||| | ||||| | || || ||| | ||| | ||| Sbjct 255 AAGCATCGAATTGGTTTTGATTAAGAGGTACTTTCACCAATCGATTGATAGCGTTTTCAA 196 Query 11237 ATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTT 11296 |||| |||||||| | ||| || || || | ||| |||||||||||||||| Sbjct 195 ATACAACCAAATCATTACGAAGATATTGTTCTGCTTGAGATTCAGTGCATACATCGCCTT 136 Query 11297 TGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAACATTAA 11356 | |||||||| |||| | || ||||||||||| || ||||||| ||||||||| || Sbjct 135 TTTTAACACGTACACCATTCGGGTATTTAATTGTGCCAAATCCAATGGTCCAAACACCAA 76 Query 11357 CACTATCGAGATATGCACTTGTACGTAAGCCTTCAAAACCT 11397 | | |||| ||| || || |||| |||||||| ||| Sbjct 75 CGCCATCGTCATAAGCTTTTAAACGTTTACCTTCAAAGCCT 35 >seq6169 Length=202695 Score = 136 bits (150), Expect = 4e-27 Identities = 287/427 (67%), Gaps = 17/427 (4%) Strand=Plus/Minus Query 10985 TTTCAAATACTTTGCGTTCTGCCTTACGTCTGTTGGCAAGACCTGGAATAAC-TTGTAAC 11043 ||||||||| ||| |||||| ||| | ||| |||| ||| | ||||| ||| Sbjct 3266 TTTCAAATAATTTACGTTCTTTAGCACGACGGTTCACAAGCCCTTGCATAACCTTGC--- 3210 Query 11044 ACACCTTTAACTCGGCCTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCG 11103 ||||| ||||| |||||| |||||||| |||| |||||||||||||| Sbjct 3209 -CACCT---------CCTTTGTTCCATCGATCAAATTGAGCTGCAGCGCCTTTATAATCT 3160 Query 11104 CCAGCATTCAATTTTCTCAATAAAGTTGAATTCGCAAATGCCGTTTCGCCAATATTGTAC 11163 |||||| || ||| | | || ||||| | |||||| |||||| ||||| Sbjct 3159 TTAGCATTTAACTTTTTGAGTAGTGTTGAGTCTTTAAATGCACCAGTGCCAATGTTGTAA 3100 Query 11164 ATTAATGAAACTAAAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTA 11223 | ||||| || |||||||| || |||||||| |||||||| || |||| | |||| Sbjct 3099 GTCAATGATACCAAAGCATCGAACTGATTTTGGTTTAATGGAACTTTAACCGAAGTATTT 3040 Query 11224 ACAGCAGATACAAATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTG 11283 ||||||||| ||||| |||||||| | ||| || ||||| || | | ||| Sbjct 3039 ACAGCAGATTCAAATTTCTTTAAATCTTGAGCCATGTAGGACTTAGCTTGTTCAGCAGTG 2980 Query 11284 CATACATCGCCTTTGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATA 11343 || ||| ||||| |||| |||| | | | | |||| || || |||||| Sbjct 2979 CAAGTATCACCTTTCTTAACTGCGACACCATT---AATTGCAGTTGTGCCATAACCAATA 2923 Query 11344 GTCCAAACATTAACACTATCGAGATATGCACTTGTACGTAAGCCTTCAAAACCTCGAATT 11403 ||||||||| |||| |||| ||| || | || | |||||||||| | || Sbjct 2922 GTCCAAACACCTACACCATCGTCATACGCTTTGAGTCGAAGATCTTCAAAACCCCTGATC 2863 Query 11404 AAATCAA 11410 |||| || Sbjct 2862 AAATTAA 2856 >seq7832 Length=242706 Score = 118 bits (130), Expect = 1e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 201209 TTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGATTATGAGTCCGCTGCTCTAAC 201268 Query 76004 CAATTGAGCTAAAGGCCC 76021 ||| ||||||| |||||| Sbjct 201269 CAACTGAGCTACAGGCCC 201286 >seq8226 Length=5263 Score = 116 bits (128), Expect = 4e-21 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 11060 CTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTC 11119 |||| |||||| ||||| |||| || |||||||| || ||||| | ||| Sbjct 1501 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 1442 Query 11120 TCAATAAAGTTGAATTCGCAAA---TGCCGTTTCGCCAATATTGTACATTAATGAAACTA 11176 | | | |||||| || || || |||| ||| || | || || | |||||| ||| Sbjct 1441 TAAGCAGAGTTGATTT-GCTAAGATTGCC--TTCACCCAAGTTATAAGTGAATGAAGCTA 1385 Query 11177 AAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAGCAGATACAA 11236 ||||||| ||||| |||||||| | ||| || | || || ||| | ||| | ||| Sbjct 1384 AAGCATCGAATTGGTTTTGATTGAGTGGCACTTTCACCAAACGATTGATAGCGTTTTCAA 1325 Query 11237 ATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTT 11296 ||||| ||||||||| | ||| || || || | ||| |||||| ||| |||| Sbjct 1324 ATACTACTAAATCATTGCGAAGATATTGTTCTGCTTGAGATTCAGTGCATGTATCCCCTT 1265 Query 11297 TGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAA 11350 | | ||||| |||| | |||||||||||||| || ||||||| ||||||| Sbjct 1264 TTTTGACACGCACACCATTCGGATATTTAATTGTGCCAAATCCAATGGTCCAAA 1211 >seq10130 Length=141206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/80 (89%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 75945 TGGT-GGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||| ||||||||| ||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 139898 TGGTAGGGCCTCCC-AGAGTCGAACTGGGCACCAACGGATTATGAGTCCGCTGCTCTAAC 139840 Query 76004 CAA--TTGAGCTAAAGGCCC 76021 ||| |||||| ||||||| Sbjct 139839 CAAGCATGAGCT-AAGGCCC 139821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533170018513080