Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018087.3
Length=166687
Score E
Sequences producing significant alignments: (Bits) Value
seq8225 143 3e-29
seq6169 136 4e-27
seq7832 118 1e-21
seq8226 116 4e-21
seq10130 91.5 2e-13
>seq8225
Length=74308
Score = 143 bits (158), Expect = 3e-29
Identities = 238/341 (70%), Gaps = 6/341 (2%)
Strand=Plus/Minus
Query 11060 CTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTC 11119
|||| |||||| ||||| |||| || |||||||| || ||||| | |||
Sbjct 372 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 313
Query 11120 TCAATAAAGTTGAATTCGCAAA---TGCCGTTTCGCCAATATTGTACATTAATGAAACTA 11176
| | | |||||| || || || |||| ||| || | || || | |||||| |||
Sbjct 312 TAAGCAGAGTTGATTT-GCTAAGATTGCC--TTCACCCAAGTTATAAGTGAATGAAGCTA 256
Query 11177 AAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAGCAGATACAA 11236
||||||| ||||| |||||||| | ||||| | || || ||| | ||| | |||
Sbjct 255 AAGCATCGAATTGGTTTTGATTAAGAGGTACTTTCACCAATCGATTGATAGCGTTTTCAA 196
Query 11237 ATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTT 11296
|||| |||||||| | ||| || || || | ||| ||||||||||||||||
Sbjct 195 ATACAACCAAATCATTACGAAGATATTGTTCTGCTTGAGATTCAGTGCATACATCGCCTT 136
Query 11297 TGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAACATTAA 11356
| |||||||| |||| | || ||||||||||| || ||||||| ||||||||| ||
Sbjct 135 TTTTAACACGTACACCATTCGGGTATTTAATTGTGCCAAATCCAATGGTCCAAACACCAA 76
Query 11357 CACTATCGAGATATGCACTTGTACGTAAGCCTTCAAAACCT 11397
| | |||| ||| || || |||| |||||||| |||
Sbjct 75 CGCCATCGTCATAAGCTTTTAAACGTTTACCTTCAAAGCCT 35
>seq6169
Length=202695
Score = 136 bits (150), Expect = 4e-27
Identities = 287/427 (67%), Gaps = 17/427 (4%)
Strand=Plus/Minus
Query 10985 TTTCAAATACTTTGCGTTCTGCCTTACGTCTGTTGGCAAGACCTGGAATAAC-TTGTAAC 11043
||||||||| ||| |||||| ||| | ||| |||| ||| | ||||| |||
Sbjct 3266 TTTCAAATAATTTACGTTCTTTAGCACGACGGTTCACAAGCCCTTGCATAACCTTGC--- 3210
Query 11044 ACACCTTTAACTCGGCCTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCG 11103
||||| ||||| |||||| |||||||| |||| ||||||||||||||
Sbjct 3209 -CACCT---------CCTTTGTTCCATCGATCAAATTGAGCTGCAGCGCCTTTATAATCT 3160
Query 11104 CCAGCATTCAATTTTCTCAATAAAGTTGAATTCGCAAATGCCGTTTCGCCAATATTGTAC 11163
|||||| || ||| | | || ||||| | |||||| |||||| |||||
Sbjct 3159 TTAGCATTTAACTTTTTGAGTAGTGTTGAGTCTTTAAATGCACCAGTGCCAATGTTGTAA 3100
Query 11164 ATTAATGAAACTAAAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTA 11223
| ||||| || |||||||| || |||||||| |||||||| || |||| | ||||
Sbjct 3099 GTCAATGATACCAAAGCATCGAACTGATTTTGGTTTAATGGAACTTTAACCGAAGTATTT 3040
Query 11224 ACAGCAGATACAAATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTG 11283
||||||||| ||||| |||||||| | ||| || ||||| || | | |||
Sbjct 3039 ACAGCAGATTCAAATTTCTTTAAATCTTGAGCCATGTAGGACTTAGCTTGTTCAGCAGTG 2980
Query 11284 CATACATCGCCTTTGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATA 11343
|| ||| ||||| |||| |||| | | | | |||| || || ||||||
Sbjct 2979 CAAGTATCACCTTTCTTAACTGCGACACCATT---AATTGCAGTTGTGCCATAACCAATA 2923
Query 11344 GTCCAAACATTAACACTATCGAGATATGCACTTGTACGTAAGCCTTCAAAACCTCGAATT 11403
||||||||| |||| |||| ||| || | || | |||||||||| | ||
Sbjct 2922 GTCCAAACACCTACACCATCGTCATACGCTTTGAGTCGAAGATCTTCAAAACCCCTGATC 2863
Query 11404 AAATCAA 11410
|||| ||
Sbjct 2862 AAATTAA 2856
>seq7832
Length=242706
Score = 118 bits (130), Expect = 1e-21
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201209 TTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGATTATGAGTCCGCTGCTCTAAC 201268
Query 76004 CAATTGAGCTAAAGGCCC 76021
||| ||||||| ||||||
Sbjct 201269 CAACTGAGCTACAGGCCC 201286
>seq8226
Length=5263
Score = 116 bits (128), Expect = 4e-21
Identities = 204/294 (69%), Gaps = 6/294 (2%)
Strand=Plus/Minus
Query 11060 CTTTATTCCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTC 11119
|||| |||||| ||||| |||| || |||||||| || ||||| | |||
Sbjct 1501 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 1442
Query 11120 TCAATAAAGTTGAATTCGCAAA---TGCCGTTTCGCCAATATTGTACATTAATGAAACTA 11176
| | | |||||| || || || |||| ||| || | || || | |||||| |||
Sbjct 1441 TAAGCAGAGTTGATTT-GCTAAGATTGCC--TTCACCCAAGTTATAAGTGAATGAAGCTA 1385
Query 11177 AAGCATCAAATTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAGCAGATACAA 11236
||||||| ||||| |||||||| | ||| || | || || ||| | ||| | |||
Sbjct 1384 AAGCATCGAATTGGTTTTGATTGAGTGGCACTTTCACCAAACGATTGATAGCGTTTTCAA 1325
Query 11237 ATACTTTTAAATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTT 11296
||||| ||||||||| | ||| || || || | ||| |||||| ||| ||||
Sbjct 1324 ATACTACTAAATCATTGCGAAGATATTGTTCTGCTTGAGATTCAGTGCATGTATCCCCTT 1265
Query 11297 TGGTAACACGTTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAA 11350
| | ||||| |||| | |||||||||||||| || ||||||| |||||||
Sbjct 1264 TTTTGACACGCACACCATTCGGATATTTAATTGTGCCAAATCCAATGGTCCAAA 1211
>seq10130
Length=141206
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/80 (89%), Gaps = 5/80 (6%)
Strand=Plus/Minus
Query 75945 TGGT-GGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003
|||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 139898 TGGTAGGGCCTCCC-AGAGTCGAACTGGGCACCAACGGATTATGAGTCCGCTGCTCTAAC 139840
Query 76004 CAA--TTGAGCTAAAGGCCC 76021
||| |||||| |||||||
Sbjct 139839 CAAGCATGAGCT-AAGGCCC 139821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533170018513080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |