Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq9956 100 6e-17 seq9798 91.5 3e-14 seq12839 80.6 5e-11 >seq9956 Length=123604 Score = 100 bits (110), Expect = 6e-17 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25152 TCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATAC 25211 || ||||| || || || |||||||| || || ||||| || | || || || ||| Sbjct 100316 TCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTGTTTATCTAC 100257 Query 25212 CGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGC 25271 || ||||||||||||||||| |||||| |||||||||| | ||||| ||||| ||||| Sbjct 100256 CGTGACGAAGTGTATAACCCGGACAGCCCTGACAAAGGGACGGCCGAAATTATTATTGGT 100197 Query 25272 AAACA 25276 || || Sbjct 100196 AAGCA 100192 >seq9798 Length=43688 Score = 91.5 bits (100), Expect = 3e-14 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 25066 TGGCGAAAGAATTT-AATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAA 25124 |||| ||||| || ||||| ||||| || || || ||||| |||||||| | || Sbjct 22523 TGGCCAAAGAGTTGCAATTG-CCAATCATTGCTCTAAGCCAGCTAAACCGAGGCTTAGAG 22581 Query 25125 AACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAG 25184 | | | ||||||||||| | | || || || || |||| || || || Sbjct 22582 CAACGCCCAGATAAGCGCCCTAAGATGAGTGATTTACGTGATAGCGGCGGCATCGAGCAA 22641 Query 25185 GATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGAC 25244 ||||| || ||| ||| || ||||| || || || |||| || || || |||| Sbjct 22642 GATGCAGACACCATCATATTCATTTACCGTGATGAGGTATATAGCCTAGATAGTGCTGAT 22701 Query 25245 AAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACAGTGAGA 25304 ||||| | |||||||||||| |||||||||| | |||||| ||||||| |||||| Sbjct 22702 AAAGGTACTGCCGAGATTATTGTTGGCAAACAGCGTAATGGCCCCATAGGCACTGTGAGA 22761 Query 25305 GC 25306 || Sbjct 22762 GC 22763 >seq12839 Length=204338 Score = 80.6 bits (88), Expect = 5e-11 Identities = 169/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 25101 TCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTG 25160 |||||||||||||| ||| |||||| | | |||| || || | | || ||||| Sbjct 81882 TCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGTCCGGTAATGTCCGACTTA 81823 Query 25161 CGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAA 25220 || || || || || || || |||||||| ||| |||| || || ||||| || || Sbjct 81822 CGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTATGTTTATTTACCGTGATGAG 81763 Query 25221 GTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGG 25280 || |||||| || || ||||| || || ||||||||||| ||||| | Sbjct 81762 GTTTATAACAAAGAGTCGAAAGAAGCAGGCACAGCTGAAATTATCATTGGTAAACAACGT 81703 Query 25281 AATGGCGAGCTAGGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAAC 25340 |||||| | | || || ||| | || || || || |||||||| ||| || Sbjct 81702 AATGGCCCGATCGGGACTGTGCGTTTAGCCTTTGAAGGTCAATACACGCGCTTTAGTAAT 81643 Query 25341 CTATCACCAGAG 25352 ||||| || ||| Sbjct 81642 CTATCGCCTGAG 81631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101511443905824