Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018269.1
Length=31766
Score E
Sequences producing significant alignments: (Bits) Value
seq9956 100 6e-17
seq9798 91.5 3e-14
seq12839 80.6 5e-11
>seq9956
Length=123604
Score = 100 bits (110), Expect = 6e-17
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 25152 TCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATAC 25211
|| ||||| || || || |||||||| || || ||||| || | || || || |||
Sbjct 100316 TCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTGTTTATCTAC 100257
Query 25212 CGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGC 25271
|| ||||||||||||||||| |||||| |||||||||| | ||||| ||||| |||||
Sbjct 100256 CGTGACGAAGTGTATAACCCGGACAGCCCTGACAAAGGGACGGCCGAAATTATTATTGGT 100197
Query 25272 AAACA 25276
|| ||
Sbjct 100196 AAGCA 100192
>seq9798
Length=43688
Score = 91.5 bits (100), Expect = 3e-14
Identities = 167/242 (69%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 25066 TGGCGAAAGAATTT-AATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAA 25124
|||| ||||| || ||||| ||||| || || || ||||| |||||||| | ||
Sbjct 22523 TGGCCAAAGAGTTGCAATTG-CCAATCATTGCTCTAAGCCAGCTAAACCGAGGCTTAGAG 22581
Query 25125 AACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAG 25184
| | | ||||||||||| | | || || || || |||| || || ||
Sbjct 22582 CAACGCCCAGATAAGCGCCCTAAGATGAGTGATTTACGTGATAGCGGCGGCATCGAGCAA 22641
Query 25185 GATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGAC 25244
||||| || ||| ||| || ||||| || || || |||| || || || ||||
Sbjct 22642 GATGCAGACACCATCATATTCATTTACCGTGATGAGGTATATAGCCTAGATAGTGCTGAT 22701
Query 25245 AAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACAGTGAGA 25304
||||| | |||||||||||| |||||||||| | |||||| ||||||| ||||||
Sbjct 22702 AAAGGTACTGCCGAGATTATTGTTGGCAAACAGCGTAATGGCCCCATAGGCACTGTGAGA 22761
Query 25305 GC 25306
||
Sbjct 22762 GC 22763
>seq12839
Length=204338
Score = 80.6 bits (88), Expect = 5e-11
Identities = 169/252 (67%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 25101 TCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTG 25160
|||||||||||||| ||| |||||| | | |||| || || | | || |||||
Sbjct 81882 TCACAGCTTAACCGTTCTCTGGAAAACCGTCCAAATAAACGTCCGGTAATGTCCGACTTA 81823
Query 25161 CGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAA 25220
|| || || || || || || |||||||| ||| |||| || || ||||| || ||
Sbjct 81822 CGTGAATCAGGTGCAATCGAGCAGGATGCCGATTTAATTATGTTTATTTACCGTGATGAG 81763
Query 25221 GTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGG 25280
|| |||||| || || ||||| || || ||||||||||| ||||| |
Sbjct 81762 GTTTATAACAAAGAGTCGAAAGAAGCAGGCACAGCTGAAATTATCATTGGTAAACAACGT 81703
Query 25281 AATGGCGAGCTAGGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAAC 25340
|||||| | | || || ||| | || || || || |||||||| ||| ||
Sbjct 81702 AATGGCCCGATCGGGACTGTGCGTTTAGCCTTTGAAGGTCAATACACGCGCTTTAGTAAT 81643
Query 25341 CTATCACCAGAG 25352
||||| || |||
Sbjct 81642 CTATCGCCTGAG 81631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 101511443905824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |