Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq2893 86.0 2e-12 >seq2893 Length=1360 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47560 TTCGGAAGGGTGGAATTTGAAATGCGACCCTTTCAAACCGATGGAGGCATGCAGAAGCAG 47619 ||||||||||| | || |||| || ||||||| |||| | || |||| ||| ||| Sbjct 938 TTCGGAAGGGTCGCGTTCGAAACGCAACCCTTTGAAACAGCCGGCGGCAAGCAACAGCGT 879 Query 47620 GAAATAGCACTGCTAAACGAACAGCAAACCACGCTGTTGATCACCTACATGCGAAACAAT 47679 ||| | || ||||| || || ||||| || | || ||||| |||||||||| |||| Sbjct 878 GAAGTTGCCCTGCTCAATGAGCAGCAGTCCGCCCTTGTGATCGCCTACATGCGCAACAGC 819 Query 47680 GAAGTTGTGCGTGAATTCAA 47699 ||| | ||||| | ||||| Sbjct 818 GAAATCGTGCGCCAGTTCAA 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157021515507124