Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018282.1
Length=61167
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 123 1e-23
>seq7053
Length=464797
Score = 123 bits (136), Expect = 1e-23
Identities = 217/313 (69%), Gaps = 10/313 (3%)
Strand=Plus/Minus
Query 4950 AACCTCGCCCGC-CCGATGTTCCAGCTCAACACGGAGTCGCCCCTGTTCGAGGCCGCGCT 5008
||||||| ||| ||||||||| ||||| || || || | |||| |||||
Sbjct 50004 AACCTCGATCGCGCCGATGTTCTCCATCAACCGCCAGAGCCCGCTCGCCAAGGCGGCGCT 49945
Query 5009 GCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGACTTGCTCAGCTT 5068
|| | | ||||| | ||| ||| | ||||||||| | || |||| || | |||||
Sbjct 49944 CATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGATCTGATGAGCTT 49885
Query 5069 CGGTTGCCCGATCCTCGCCCTGGGCGATCCCGGACAGCTCCCGCCCGT---GGGCGGCAC 5125
||| || ||||||| || ||||||||||||||||| ||||| || ||||||
Sbjct 49884 CGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTTTCGGGCGG--- 49828
Query 5126 CCCCTTCTTCA---AGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCA 5182
| |||||||| || | |||| || |||||| |||| || || || |||||| |
Sbjct 49827 CGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGGCAGGCCAA 49768
Query 5183 GGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTCCGCCCCGG 5242
|||||| || |||||| | ||| ||| || ||||| ||||| | | || | |||
Sbjct 49767 GGACAATCCCATCATCCATCTCGCCATGGATGTGCGCGAAGGCCGTGAGATCATGCGCGG 49708
Query 5243 CGACTACGGTGCC 5255
||| || ||| ||
Sbjct 49707 CGATTATGGTTCC 49695
Score = 82.4 bits (90), Expect = 3e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 5616 GAGGAGTTCGACTATGGATATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5675
|| || ||||| | || |||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 49321 GACGAATTCGATTTCGGCTATGCGCTGACCGTGCACAAGGCGCAGGGCTCGCAGTGGAAC 49262
Query 5676 AACGTCCTGCTGTTTGATGAGTGGTACG 5703
||||| | || || |||||| | ||||
Sbjct 49261 AACGTGGTTCTCTTCGATGAGAGCTACG 49234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195577819418782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |