Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq7053 123 1e-23 >seq7053 Length=464797 Score = 123 bits (136), Expect = 1e-23 Identities = 217/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 4950 AACCTCGCCCGC-CCGATGTTCCAGCTCAACACGGAGTCGCCCCTGTTCGAGGCCGCGCT 5008 ||||||| ||| ||||||||| ||||| || || || | |||| ||||| Sbjct 50004 AACCTCGATCGCGCCGATGTTCTCCATCAACCGCCAGAGCCCGCTCGCCAAGGCGGCGCT 49945 Query 5009 GCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGACTTGCTCAGCTT 5068 || | | ||||| | ||| ||| | ||||||||| | || |||| || | ||||| Sbjct 49944 CATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGATCTGATGAGCTT 49885 Query 5069 CGGTTGCCCGATCCTCGCCCTGGGCGATCCCGGACAGCTCCCGCCCGT---GGGCGGCAC 5125 ||| || ||||||| || ||||||||||||||||| ||||| || |||||| Sbjct 49884 CGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTTTCGGGCGG--- 49828 Query 5126 CCCCTTCTTCA---AGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCA 5182 | |||||||| || | |||| || |||||| |||| || || || |||||| | Sbjct 49827 CGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGGCAGGCCAA 49768 Query 5183 GGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTCCGCCCCGG 5242 |||||| || |||||| | ||| ||| || ||||| ||||| | | || | ||| Sbjct 49767 GGACAATCCCATCATCCATCTCGCCATGGATGTGCGCGAAGGCCGTGAGATCATGCGCGG 49708 Query 5243 CGACTACGGTGCC 5255 ||| || ||| || Sbjct 49707 CGATTATGGTTCC 49695 Score = 82.4 bits (90), Expect = 3e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 5616 GAGGAGTTCGACTATGGATATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5675 || || ||||| | || |||||||| ||||| |||||| |||||||||| ||||||||| Sbjct 49321 GACGAATTCGATTTCGGCTATGCGCTGACCGTGCACAAGGCGCAGGGCTCGCAGTGGAAC 49262 Query 5676 AACGTCCTGCTGTTTGATGAGTGGTACG 5703 ||||| | || || |||||| | |||| Sbjct 49261 AACGTGGTTCTCTTCGATGAGAGCTACG 49234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195577819418782