Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018454.1
Length=39974
Score E
Sequences producing significant alignments: (Bits) Value
seq1182 187 6e-43
seq7305 138 3e-28
seq11465 80.6 7e-11
>seq1182
Length=446
Score = 187 bits (206), Expect = 6e-43
Identities = 181/233 (78%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 17576 TTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGGTACGTTTC 17635
||||||||||| ||| ||||||||| ||||| ||||| | || ||| ||| || |||
Sbjct 234 TTCTGGCGGCTGAACAACCTGTACTTCATCACGGACAAGCAGGGCAAGAAGGTCCGCTTC 175
Query 17636 AAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACATCATCCTG 17695
||||| | ||||||| | | |||||| |||||||||| || || |||||||||||
Sbjct 174 CGCATGACGCAGGAGCAGGTCGATTACTTCCAGGGGATGCACACCCGCAACATCATCCTC 115
Query 17696 AAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGATGCCGCGCTC 17755
|| || | ||||| || || || || || || |||||| | ||||| |||||||||||
Sbjct 114 AAGGCCAGGCAGCTTGGGTTCACTACCCTAGTCTGCATCGTCCAGCTGGATGCCGCGCTG 55
Query 17756 TTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAGCG 17808
|| |||| ||| |||||||| || || || |||||||| || ||||| |||||
Sbjct 54 TTCGAGGCCGCCAAGTGCGCCCTGATAGCCCACACCCTGAACGACGCCAAGCG 2
>seq7305
Length=28244
Score = 138 bits (152), Expect = 3e-28
Identities = 859/1358 (63%), Gaps = 26/1358 (2%)
Strand=Plus/Minus
Query 17633 TTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACATCATC 17692
|| |||||||| || |||||||| | ||||| || || |||||| || || ||||
Sbjct 22880 TTTAAAATGACACCTGAGCAGTTAGAATACTTTGATGGTATGCATGACCGTAATGTCATT 22821
Query 17693 CTGAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGATGCCGCG 17752
|| ||||| || ||||| ||||| || || || ||||| |||||||| ||| |||
Sbjct 22820 CTTAAAGCTCGTCAGCTTGGTTTCACTACAGAAGTTTGCATTATTCAGCTAGATCTAGCG 22761
Query 17753 CTCTTTGAGGGCGCAA--AGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAGCGCC 17810
| ||| | | || | || || | || || || || | || || | ||||
Sbjct 22760 TTATTTCAT--CATAAGCATTGTGCTTTGATTGCACATACTTTACCAGATGCTGAACGCC 22703
Query 17811 TTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGCGGCTA 17870
| || || | || | ||||||||| ||||| || | ||| ||| | | ||| |
Sbjct 22702 TATTTCGCAATAAGACCAAATATGCTTATGACCGCTTAACTGATGATGTGAAGCAGGCGA 22643
Query 17871 ATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCTCTATG 17930
|| | | || || | | | || | || || ||||| || || || | ||
Sbjct 22642 ATAAAGTTACCAAAGAAACAACCAGTGAAATTGTATTCAAGAAAGGTGGATCCGTTACTG 22583
Query 17931 TTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTT-CATGTGTCCGAGTTCGGGAAG 17989
|||| || || || ||||| || ||||| | | ||| ||||| || || || ||||||
Sbjct 22582 TTTCAACTTCATTCCGTGGTGGAACGCTATAC-AGCTTGCATGTTTCAGAATTTGGGAAG 22524
Query 17990 ATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGCTGTT 18049
|| || |||||| | || || || || || ||||| |||||||| ||||||||||||
Sbjct 22523 ATTTGTGCAAAGCATCCTGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGTT 22464
Query 18050 TCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCTTC 18109
|| || || | || ||||||| || |||||||| ||| || |||||||
Sbjct 22463 CCACTTGGTGGTCGGATTACTCTTGAAAGTACTGCAGAAGGACGCAGTGGTTATTTCTAT 22404
Query 18110 GATTATTGCC-AGACTGCGGAAAAAGCGGCGCTATCTGGTGCGCCCCT-CTCTCAACTGA 18167
| ||||||| |||| || ||||| || ||| | | | || ||
Sbjct 22403 CAATATTGCCAAGAC-GCTGAAAAGTTAAAACTTCAAGGTAAAACTTTAAACCCATTAGA 22345
Query 18168 GCTGGAAATTCTTCTTTTTCAGCTGGTGGATGAACCCCCAGTATGCAATCGACCCCGTAG 18227
| ||||||||||| || ||| ||||||| |||| | | ||| ||| ||| | |
Sbjct 22344 G-TGGAAATTCTTTTTCTTCTCATGGTGGAAGAACTCTGAATATCAAAT---CCCAGCAA 22289
Query 18228 AGCCGCTATCACAGCGCCTGCGCGATTATTTCGATGAGCTGGAGGCAAAGCACCGCCTTA 18287
| |||| | || | || || ||| || | | | |||||| ||
Sbjct 22288 CAGAGATATCGGAACGATTAAAGGAATACTTCTCAGATTTAAAAGTTAAGCACAATATT- 22230
Query 18288 CGCTCAACGACCGCCAGAA-AG-CGTGGTATCAGGCCAAAGAAACCACCCTCGGCGACGA 18345
| | | || ||| | || || | |||||| ||||||||| || | || || ||
Sbjct 22229 CACACCAC-ACCTGAACAACAGTCATGGTATGCATCCAAAGAAAAGACTTTGGGTGATGA 22171
Query 18346 CATGAAACGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTCCGTTGAAGGCGC 18405
||| || || ||||| || || || | ||||| || ||||| || |||||||||||
Sbjct 22170 CATCAAGCGAGAATATCCAAGCATTCCATCTGAGGCATTTCAGCAATCAGTTGAAGGCGC 22111
Query 18406 TTACTACGCGAAACAGTTCGCGTTTCTCTACGCACAGCGCCGCATCGGCCAGTTGCCGGA 18465
|| ||| ||| || || || | || ||| | | || | || |||| ||
Sbjct 22110 ATATTACAAGAAGCAATTTAAATTCTTATATGCAAATGGTCGAGTTGGTGAGTTACCAAG 22051
Query 18466 TAACGATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGTGACTCAACGGCTAT 18525
||| ||||| | || || || || |||||| | ||||| ||||||| ||| ||
Sbjct 22050 TAATGATCATTTGCCAGTAATGACCTTTTGGGATTTAGGCGTTTCAGACTCAATGGCAAT 21991
Query 18526 CTGGTTTGTGCG----CGTGGTGGGGAACGAGTTCCACATCATCGACTACTACGAGAACA 18581
|||||| | | | || ||| | | || |||| || ||||||||||||
Sbjct 21990 TTGGTTTATCAGGAAAATTTCTGATGAATG-TTATCAAGTCATTGATTACTACGAGAACT 21932
Query 18582 GCGGCGAAGGGCTTCGCCATTACATGAAGATCCTTAAAGAAAAGGGATACACCTACGCCG 18641
|| ||||| | | |||||| | || | | ||||| | || ||||| || |
Sbjct 21931 CGGGTGAAGGCTTAAGACATTACTTTAAAGTGTTGAAAGATAGAGGCTACACATATTCAA 21872
Query 18642 AACACTGGGCGCCCCACGATATAGACAACCGCGAGTTTGCGAACGACGGCAAATCCCGCC 18701
|||||| || || ||||| || | ||||| || | || | ||||| || |
Sbjct 21871 AACACTACGCACCACACGACATCAAAAACCGTTCTTTAACAGGTGATGCTAAATCTCGTC 21812
Query 18702 GCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATCTCG-TTCAGT 18760
| | || || |||||||| | || || ||||||||||| | ||| ||
Sbjct 21811 TAGATATCGCTAAAGAAGGTTATGAAATCGATGGTGAAATCTATTCCGT-TCGATTTGAA 21753
Query 18761 GTGGTGCCGAAGC-TCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATCCTGCCCCG 18819
||||| |||| | ||||| || || || || | | || || |||||
Sbjct 21752 GTGGT-TGAAAGCATAGGTGTGATGGATGGTATAGAACAGACTCGTGAGATCCTTAAATA 21694
Query 18820 CTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCCTACCGCAA 18879
||| | ||||| || || || ||||| || || | ||| ||| || ||
Sbjct 21693 CTGTGAGTTTGATGAAACCAAGTGTGAAGAAGGTATTTCTCATTTAGAAAACTATCGTAA 21634
Query 18880 GGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTACACCTCGCA 18939
|||||||||| ||| || || |||||||| || ||| |||| || | ||||| ||
Sbjct 21633 AGAGTGGGATGACAAAAAAGGGTGTTGGAAAGATAAACCTCTGCATGATCATACCTCTCA 21574
Query 18940 CGCTTCGGACGGTTTCCGCTACTTCGCTGTAGCGATGA 18977
| | | || | |||||| || | |||||||||||
Sbjct 21573 TGGTGCTGATGCATTCCGCATGTTTGGTGTAGCGATGA 21536
>seq11465
Length=2819
Score = 80.6 bits (88), Expect = 7e-11
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 17930 GTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGGGAAG 17989
|| ||||| ||| | || ||||||||||| || || || || ||||| | ||| |||
Sbjct 2478 GTCTCGACCTCGCTGCGCTCCGGCACGCTGCAGTACCTGCACGTCTCCGAATACGGCAAG 2419
Query 17990 ATCTGCGCAAAGTACCCGGACAAGGCGCGCGA 18021
|||||||| || || |||||||||||||||||
Sbjct 2418 ATCTGCGCCAAATATCCGGACAAGGCGCGCGA 2387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127772346943488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |