Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq1182 187 6e-43 seq7305 138 3e-28 seq11465 80.6 7e-11 >seq1182 Length=446 Score = 187 bits (206), Expect = 6e-43 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 17576 TTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGGTACGTTTC 17635 ||||||||||| ||| ||||||||| ||||| ||||| | || ||| ||| || ||| Sbjct 234 TTCTGGCGGCTGAACAACCTGTACTTCATCACGGACAAGCAGGGCAAGAAGGTCCGCTTC 175 Query 17636 AAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACATCATCCTG 17695 ||||| | ||||||| | | |||||| |||||||||| || || ||||||||||| Sbjct 174 CGCATGACGCAGGAGCAGGTCGATTACTTCCAGGGGATGCACACCCGCAACATCATCCTC 115 Query 17696 AAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGATGCCGCGCTC 17755 || || | ||||| || || || || || || |||||| | ||||| ||||||||||| Sbjct 114 AAGGCCAGGCAGCTTGGGTTCACTACCCTAGTCTGCATCGTCCAGCTGGATGCCGCGCTG 55 Query 17756 TTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAGCG 17808 || |||| ||| |||||||| || || || |||||||| || ||||| ||||| Sbjct 54 TTCGAGGCCGCCAAGTGCGCCCTGATAGCCCACACCCTGAACGACGCCAAGCG 2 >seq7305 Length=28244 Score = 138 bits (152), Expect = 3e-28 Identities = 859/1358 (63%), Gaps = 26/1358 (2%) Strand=Plus/Minus Query 17633 TTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACATCATC 17692 || |||||||| || |||||||| | ||||| || || |||||| || || |||| Sbjct 22880 TTTAAAATGACACCTGAGCAGTTAGAATACTTTGATGGTATGCATGACCGTAATGTCATT 22821 Query 17693 CTGAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGATGCCGCG 17752 || ||||| || ||||| ||||| || || || ||||| |||||||| ||| ||| Sbjct 22820 CTTAAAGCTCGTCAGCTTGGTTTCACTACAGAAGTTTGCATTATTCAGCTAGATCTAGCG 22761 Query 17753 CTCTTTGAGGGCGCAA--AGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAGCGCC 17810 | ||| | | || | || || | || || || || | || || | |||| Sbjct 22760 TTATTTCAT--CATAAGCATTGTGCTTTGATTGCACATACTTTACCAGATGCTGAACGCC 22703 Query 17811 TTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGCGGCTA 17870 | || || | || | ||||||||| ||||| || | ||| ||| | | ||| | Sbjct 22702 TATTTCGCAATAAGACCAAATATGCTTATGACCGCTTAACTGATGATGTGAAGCAGGCGA 22643 Query 17871 ATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCTCTATG 17930 || | | || || | | | || | || || ||||| || || || | || Sbjct 22642 ATAAAGTTACCAAAGAAACAACCAGTGAAATTGTATTCAAGAAAGGTGGATCCGTTACTG 22583 Query 17931 TTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTT-CATGTGTCCGAGTTCGGGAAG 17989 |||| || || || ||||| || ||||| | | ||| ||||| || || || |||||| Sbjct 22582 TTTCAACTTCATTCCGTGGTGGAACGCTATAC-AGCTTGCATGTTTCAGAATTTGGGAAG 22524 Query 17990 ATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGCTGTT 18049 || || |||||| | || || || || || ||||| |||||||| |||||||||||| Sbjct 22523 ATTTGTGCAAAGCATCCTGATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGTT 22464 Query 18050 TCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCTTC 18109 || || || | || ||||||| || |||||||| ||| || ||||||| Sbjct 22463 CCACTTGGTGGTCGGATTACTCTTGAAAGTACTGCAGAAGGACGCAGTGGTTATTTCTAT 22404 Query 18110 GATTATTGCC-AGACTGCGGAAAAAGCGGCGCTATCTGGTGCGCCCCT-CTCTCAACTGA 18167 | ||||||| |||| || ||||| || ||| | | | || || Sbjct 22403 CAATATTGCCAAGAC-GCTGAAAAGTTAAAACTTCAAGGTAAAACTTTAAACCCATTAGA 22345 Query 18168 GCTGGAAATTCTTCTTTTTCAGCTGGTGGATGAACCCCCAGTATGCAATCGACCCCGTAG 18227 | ||||||||||| || ||| ||||||| |||| | | ||| ||| ||| | | Sbjct 22344 G-TGGAAATTCTTTTTCTTCTCATGGTGGAAGAACTCTGAATATCAAAT---CCCAGCAA 22289 Query 18228 AGCCGCTATCACAGCGCCTGCGCGATTATTTCGATGAGCTGGAGGCAAAGCACCGCCTTA 18287 | |||| | || | || || ||| || | | | |||||| || Sbjct 22288 CAGAGATATCGGAACGATTAAAGGAATACTTCTCAGATTTAAAAGTTAAGCACAATATT- 22230 Query 18288 CGCTCAACGACCGCCAGAA-AG-CGTGGTATCAGGCCAAAGAAACCACCCTCGGCGACGA 18345 | | | || ||| | || || | |||||| ||||||||| || | || || || Sbjct 22229 CACACCAC-ACCTGAACAACAGTCATGGTATGCATCCAAAGAAAAGACTTTGGGTGATGA 22171 Query 18346 CATGAAACGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTCCGTTGAAGGCGC 18405 ||| || || ||||| || || || | ||||| || ||||| || ||||||||||| Sbjct 22170 CATCAAGCGAGAATATCCAAGCATTCCATCTGAGGCATTTCAGCAATCAGTTGAAGGCGC 22111 Query 18406 TTACTACGCGAAACAGTTCGCGTTTCTCTACGCACAGCGCCGCATCGGCCAGTTGCCGGA 18465 || ||| ||| || || || | || ||| | | || | || |||| || Sbjct 22110 ATATTACAAGAAGCAATTTAAATTCTTATATGCAAATGGTCGAGTTGGTGAGTTACCAAG 22051 Query 18466 TAACGATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGTGACTCAACGGCTAT 18525 ||| ||||| | || || || || |||||| | ||||| ||||||| ||| || Sbjct 22050 TAATGATCATTTGCCAGTAATGACCTTTTGGGATTTAGGCGTTTCAGACTCAATGGCAAT 21991 Query 18526 CTGGTTTGTGCG----CGTGGTGGGGAACGAGTTCCACATCATCGACTACTACGAGAACA 18581 |||||| | | | || ||| | | || |||| || |||||||||||| Sbjct 21990 TTGGTTTATCAGGAAAATTTCTGATGAATG-TTATCAAGTCATTGATTACTACGAGAACT 21932 Query 18582 GCGGCGAAGGGCTTCGCCATTACATGAAGATCCTTAAAGAAAAGGGATACACCTACGCCG 18641 || ||||| | | |||||| | || | | ||||| | || ||||| || | Sbjct 21931 CGGGTGAAGGCTTAAGACATTACTTTAAAGTGTTGAAAGATAGAGGCTACACATATTCAA 21872 Query 18642 AACACTGGGCGCCCCACGATATAGACAACCGCGAGTTTGCGAACGACGGCAAATCCCGCC 18701 |||||| || || ||||| || | ||||| || | || | ||||| || | Sbjct 21871 AACACTACGCACCACACGACATCAAAAACCGTTCTTTAACAGGTGATGCTAAATCTCGTC 21812 Query 18702 GCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATCTCG-TTCAGT 18760 | | || || |||||||| | || || ||||||||||| | ||| || Sbjct 21811 TAGATATCGCTAAAGAAGGTTATGAAATCGATGGTGAAATCTATTCCGT-TCGATTTGAA 21753 Query 18761 GTGGTGCCGAAGC-TCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATCCTGCCCCG 18819 ||||| |||| | ||||| || || || || | | || || ||||| Sbjct 21752 GTGGT-TGAAAGCATAGGTGTGATGGATGGTATAGAACAGACTCGTGAGATCCTTAAATA 21694 Query 18820 CTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCCTACCGCAA 18879 ||| | ||||| || || || ||||| || || | ||| ||| || || Sbjct 21693 CTGTGAGTTTGATGAAACCAAGTGTGAAGAAGGTATTTCTCATTTAGAAAACTATCGTAA 21634 Query 18880 GGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTACACCTCGCA 18939 |||||||||| ||| || || |||||||| || ||| |||| || | ||||| || Sbjct 21633 AGAGTGGGATGACAAAAAAGGGTGTTGGAAAGATAAACCTCTGCATGATCATACCTCTCA 21574 Query 18940 CGCTTCGGACGGTTTCCGCTACTTCGCTGTAGCGATGA 18977 | | | || | |||||| || | ||||||||||| Sbjct 21573 TGGTGCTGATGCATTCCGCATGTTTGGTGTAGCGATGA 21536 >seq11465 Length=2819 Score = 80.6 bits (88), Expect = 7e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 17930 GTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGGGAAG 17989 || ||||| ||| | || ||||||||||| || || || || ||||| | ||| ||| Sbjct 2478 GTCTCGACCTCGCTGCGCTCCGGCACGCTGCAGTACCTGCACGTCTCCGAATACGGCAAG 2419 Query 17990 ATCTGCGCAAAGTACCCGGACAAGGCGCGCGA 18021 |||||||| || || ||||||||||||||||| Sbjct 2418 ATCTGCGCCAAATATCCGGACAAGGCGCGCGA 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127772346943488