Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8560 102 6e-17 seq6889 98.7 8e-16 seq899 96.9 3e-15 seq5233 82.4 6e-11 >seq8560 Length=3069389 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || ||||||||||| || || || ||||| || ||||| || | | ||| | |||| Sbjct 2390286 AACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 2390227 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || || || || ||||| ||||| ||||| Sbjct 2390226 TCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTATCC 2390168 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||||| ||||| || ||||| | || || | ||||||| || Sbjct 2390167 TGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGTC 2390108 Query 101438 TTGCCGGTTAA-AGTTTTTACAAATATCTGCAT 101469 || || || || ||| || ||||| |||||||| Sbjct 2390107 TTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075 >seq6889 Length=11136585 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || || || || || |||||||| | Sbjct 1034237 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1034296 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| || ||||| || | | ||| || || || ||| Sbjct 1034297 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034356 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | |||||| | ||||| Sbjct 1034357 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1034416 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | ||||| || || || ||||| Sbjct 1034417 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | ||| |||| ||| Sbjct 1034033 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCCAGCTGC 1034092 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || ||||||||||| ||||| || || || Sbjct 1034093 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 1034152 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | || || || || |||| || |||||||| Sbjct 1034153 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTC 1034212 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 1034213 AGGGTCTTCACGAAGATCTGCAT 1034235 >seq899 Length=2520420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | || | |||| |||| || Sbjct 2265338 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 2265397 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | |||||| || || || ||||||||||| ||||| || || Sbjct 2265398 TTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTC 2265457 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || ||||| | ||||| || || Sbjct 2265458 ACCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTG 2265517 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || |||||||| |||||||| || Sbjct 2265518 AGGGTCTTTACAAAGATCTGCATTGT 2265543 >seq5233 Length=2008183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||||||||| || ||||| |||| | || |||||||| ||||| |||| || Sbjct 1606587 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTT 1606646 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| || || |||||| |||||| | || || | || ||||| |||||| Sbjct 1606647 TATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGA 1606706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396205670406063