Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018843.1
Length=103299
Score E
Sequences producing significant alignments: (Bits) Value
seq11257 102 5e-17
seq10549 91.5 1e-13
seq9538 87.8 1e-12
seq6415 84.2 1e-11
>seq11257
Length=11324
Score = 102 bits (112), Expect = 5e-17
Identities = 180/260 (69%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608
||||||||||| || |||||| |||||| ||| | || ||||||| ||||
Sbjct 3277 ACGACCAACAACCGCATGGAGCTGATGGCCGCGATCCAGGCTCTGGAGCTCTTGAACCGT 3218
Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668
|||||||| || ||||| ||||||||||||| | | || || || | |||
Sbjct 3217 CCCTGCAAGGTCGAGCTGCACACCGACAGCCAGTACGTGATGAAGGGAATCCAGGAGTGG 3158
Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728
|| ||||||||| ||| |||| || | || |||| || ||||| |||| |
Sbjct 3157 ATCCGCGGCTGGAAGGCGCGCGGCTGGAAGACCGCCGACAAGAGCCCGGTCAAGAACGAC 3098
Query 79729 GATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787
|| |||||||| ||||| || || || ||| || || ||| | ||| |||| |||||
Sbjct 3097 GACCTCTGGAAGCGTCTCGACGCCGCGCGCGAG-CGGCACGACGTCGACTGGCGCTGGGT 3039
Query 79788 TAAAGGTCATGCCGGTCATC 79807
|| || || ||||| ||||
Sbjct 3038 CAAGGGCCACGCCGGCCATC 3019
>seq10549
Length=25876
Score = 91.5 bits (100), Expect = 1e-13
Identities = 182/270 (67%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608
|| |||||||| || |||||| |||||| ||| | ||||||||| ||||||
Sbjct 665 ACCACCAACAACCGCATGGAGCTGATGGCGGCCATCCAGGCGCTGGAGGCGCTGAAGCGG 724
Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668
|| ||||| || ||||| ||||||||||||| | |||||| | || | |||
Sbjct 725 CCGTGCAAGGTCGAGCTGCACACCGACAGCCAGTACGTGCGCAACGGCGTCACCCAGTGG 784
Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728
|| | ||||||||| ||| |||| || | || |||| || ||||| ||||
Sbjct 785 ATCCACGGCTGGAAGGCGCGCGGCTGGAAGACCGCAGACAAGAGCCCGGTCAAGAACGAG 844
Query 79729 GATCTCTGGAAACGTCTTGATGCGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGGTT 79788
|| || ||| || || || || ||| | ||| ||| | ||| ||| |||||
Sbjct 845 GACCTGTGGCGCCGCCTCGACGCCGCCCGCGCCCGGCACGAAGTCGATTGGCGCTGGGTC 904
Query 79789 AAAGGTCATGCCGGTCATCGCGAGAACGAA 79818
|| || || ||||| || | | |||||||
Sbjct 905 AAGGGCCACGCCGGCCACCCCCTGAACGAA 934
>seq9538
Length=646221
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 72796 CAACATCCAGTTCCTGAAAGACAATGGCGTCAAAATCTGGGATGCCTGGGCCGATGAAAA 72855
||||||| | | ||||| ||| | ||||||| |||||||| | ||||| |||| ||
Sbjct 486644 CAACATCAAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAA 486703
Query 72856 TGGCGATTTAGGCCCGGTCTATGGCAAGCAATGGCG 72891
|||||| | |||||||||||||||||||| |||||
Sbjct 486704 GGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739
>seq6415
Length=247467
Score = 84.2 bits (92), Expect = 1e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 72796 CAACATCCAGTTCCTGAAAGACAATGGCGTCAAAATCTGGGATGCCTGGGCCGATGAAAA 72855
||||||| | ||| || ||||| ||||| |||||||| | |||||||| |||||
Sbjct 53112 CAACATCGCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAA 53171
Query 72856 TGGCGATTTAGGCCCGGTCTATGGCAAGCAATGGCGTCGGTGGG 72899
|||||| | ||||||||||| |||||||| ||||| |||||
Sbjct 53172 CGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGGG 53215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330371355298740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |