Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq11257 102 5e-17 seq10549 91.5 1e-13 seq9538 87.8 1e-12 seq6415 84.2 1e-11 >seq11257 Length=11324 Score = 102 bits (112), Expect = 5e-17 Identities = 180/260 (69%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608 ||||||||||| || |||||| |||||| ||| | || ||||||| |||| Sbjct 3277 ACGACCAACAACCGCATGGAGCTGATGGCCGCGATCCAGGCTCTGGAGCTCTTGAACCGT 3218 Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668 |||||||| || ||||| ||||||||||||| | | || || || | ||| Sbjct 3217 CCCTGCAAGGTCGAGCTGCACACCGACAGCCAGTACGTGATGAAGGGAATCCAGGAGTGG 3158 Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728 || ||||||||| ||| |||| || | || |||| || ||||| |||| | Sbjct 3157 ATCCGCGGCTGGAAGGCGCGCGGCTGGAAGACCGCCGACAAGAGCCCGGTCAAGAACGAC 3098 Query 79729 GATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787 || |||||||| ||||| || || || ||| || || ||| | ||| |||| ||||| Sbjct 3097 GACCTCTGGAAGCGTCTCGACGCCGCGCGCGAG-CGGCACGACGTCGACTGGCGCTGGGT 3039 Query 79788 TAAAGGTCATGCCGGTCATC 79807 || || || ||||| |||| Sbjct 3038 CAAGGGCCACGCCGGCCATC 3019 >seq10549 Length=25876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 182/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608 || |||||||| || |||||| |||||| ||| | ||||||||| |||||| Sbjct 665 ACCACCAACAACCGCATGGAGCTGATGGCGGCCATCCAGGCGCTGGAGGCGCTGAAGCGG 724 Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668 || ||||| || ||||| ||||||||||||| | |||||| | || | ||| Sbjct 725 CCGTGCAAGGTCGAGCTGCACACCGACAGCCAGTACGTGCGCAACGGCGTCACCCAGTGG 784 Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728 || | ||||||||| ||| |||| || | || |||| || ||||| |||| Sbjct 785 ATCCACGGCTGGAAGGCGCGCGGCTGGAAGACCGCAGACAAGAGCCCGGTCAAGAACGAG 844 Query 79729 GATCTCTGGAAACGTCTTGATGCGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGGTT 79788 || || ||| || || || || ||| | ||| ||| | ||| ||| ||||| Sbjct 845 GACCTGTGGCGCCGCCTCGACGCCGCCCGCGCCCGGCACGAAGTCGATTGGCGCTGGGTC 904 Query 79789 AAAGGTCATGCCGGTCATCGCGAGAACGAA 79818 || || || ||||| || | | ||||||| Sbjct 905 AAGGGCCACGCCGGCCACCCCCTGAACGAA 934 >seq9538 Length=646221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 72796 CAACATCCAGTTCCTGAAAGACAATGGCGTCAAAATCTGGGATGCCTGGGCCGATGAAAA 72855 ||||||| | | ||||| ||| | ||||||| |||||||| | ||||| |||| || Sbjct 486644 CAACATCAAATATCTGAACGACCACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAA 486703 Query 72856 TGGCGATTTAGGCCCGGTCTATGGCAAGCAATGGCG 72891 |||||| | |||||||||||||||||||| ||||| Sbjct 486704 GGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCG 486739 >seq6415 Length=247467 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 72796 CAACATCCAGTTCCTGAAAGACAATGGCGTCAAAATCTGGGATGCCTGGGCCGATGAAAA 72855 ||||||| | ||| || ||||| ||||| |||||||| | |||||||| ||||| Sbjct 53112 CAACATCGCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAA 53171 Query 72856 TGGCGATTTAGGCCCGGTCTATGGCAAGCAATGGCGTCGGTGGG 72899 |||||| | ||||||||||| |||||||| ||||| ||||| Sbjct 53172 CGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGGG 53215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330371355298740