Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6889 86.0 5e-12
seq8560 84.2 2e-11
>seq6889
Length=11136585
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||| || || || |||||| ||||| |||||||||||
Sbjct 1033780 GCCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 1033839
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| |||||| |||||||| || || | ||| || || | |||
Sbjct 1033840 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1033899
Query 48659 AACGCCCTCCTTGTC 48673
|| ||| ||||| ||
Sbjct 1033900 AATGCCTTCCTTATC 1033914
>seq8560
Length=3069389
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| ||||| || ||| ||| |||||||| ||||| ||||| | | | || | ||
Sbjct 2390287 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2390228
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| || || || | |||| || ||||| ||
Sbjct 2390227 TTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTTATC 2390169
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| ||||| | | | || || | ||| |||| | || || ||
Sbjct 2390168 CTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGATGGT 2390109
Query 48734 TTTTCCCGTCAA-AGTTTTTACAAAAATCTGCATCGTG 48770
|| || ||||| ||| || ||||||||||||||| ||
Sbjct 2390108 CTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTTG 2390071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380867685927057
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |