Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019398.1
Length=178193
Score E
Sequences producing significant alignments: (Bits) Value
seq6415 95.1 1e-14
seq9470 93.3 5e-14
seq7053 87.8 2e-12
>seq6415
Length=247467
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39582 GACCAGATTGCAAAAATCATCGAACAACTGAAAACCACACCAGACGATCGCGGGATCATC 39641
|||||||| || || | ||||| | || || |||| ||| | ||| | ||||
Sbjct 53239 GACCAGATCGCCAACCTGGTCGAAAACCTAAAGACCAATCCAAGCAGCCGCCGCCACATC 53298
Query 39642 GTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTGTTTC 39701
|| | || |||||||| | ||| | || || ||||| |||| || || ||||| |
Sbjct 53299 GTCACGGCCTGGAACCCCGCCGATGTCGACGACATGGCCCTGCCGCCCTGCCACTGCCTG 53358
Query 39702 TTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGAT 39761
||||||||| |||| |||| || ||| ||| ||||| || | ||
Sbjct 53359 TTCCAGTTCTTCGTCGCGGACGGAAAGCTGAGCTGCCAGCTCTATCAACGCAGCGCCGAC 53418
Query 39762 GTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 39808
|| ||||||||| |||||||||| |||||||||||||| || |||||
Sbjct 53419 GTGTTCTTAGGGGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 53465
>seq9470
Length=127963
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 39638 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTG 39697
|||||| || || |||||||| | || | || || ||||| |||| ||||| |||||
Sbjct 52878 CATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGACATGGCCCTGCCGCCGTGCCACTG 52819
Query 39698 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 39757
| ||||||||| |||| |||| |||||||| | | || ||||| || |
Sbjct 52818 CCTGTTCCAGTTCTTCGTGGCGGACGGAAAACTGTCCTGCCTGCTTTACCAGCGCTCGGC 52759
Query 39758 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 39808
|| | ||| | || |||||||||| |||||||||||||| || |||||
Sbjct 52758 CGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 52708
>seq7053
Length=464797
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 39638 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTG 39697
||||||||| || |||||||| | |||| || ||||| ||| || ||||||||
Sbjct 70514 CATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAATGGCGTTGCCGCCCTGTCACTG 70455
Query 39698 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 39757
| ||||||||| || | | || || ||||| ||| |||||||| || |
Sbjct 70454 CCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGC 70395
Query 39758 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 39808
||| ||||| | || |||||||||| ||||||||||| || || |||||
Sbjct 70394 CGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGAC 70344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569982287758920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |