Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq11739 107 4e-18 >seq11739 Length=237542 Score = 107 bits (118), Expect = 4e-18 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 133957 TGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTC-AATTCTTCGTAAATG 134015 |||| || |||| | | || || ||||| || ||||| || |||| || || | | Sbjct 9023 TGAAGCAGGTAAAGTTGCCTTACCGCCATGCCACA-CTTTATTCCAATTTTTTGTTCAGG 8965 Query 134016 ACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCAT 134075 | || ||||| || || || ||||||||||| ||| | |||||||| || |||| Sbjct 8964 ATGGAAAGTTGTCTTGCCAACTTTATCAACGTAGTGCAGATGTTTTCTTAGGGGTGCCAT 8905 Query 134076 TCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAG 134135 | || ||||| ||| | |||| ||||||||| | || ||||||||||| |||| | Sbjct 8904 TTAATATTGCCAGCTATGCTCTACTGACTCATATGGTTGCTCAAGTTTGTGGTTTAGGCG 8845 Query 134136 TTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATA 134177 | ||||| ||||| |||| || || || | |||||||||| Sbjct 8844 TAGGTGATTTTGTCTGGACTGGCGGTGA--TACACATTTATA 8805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147368979963382