Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019423.1
Length=72570
Score E
Sequences producing significant alignments: (Bits) Value
seq9151 100 1e-16
seq7305 100 1e-16
>seq9151
Length=36585
Score = 100 bits (110), Expect = 1e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 27253 TTCTGCTTAAGCAGGTAACCTTCCAGTAACCAGACCTTATCGATTGCATTTTCATAGGCA 27312
|| || ||||| | |||||||||||| ||| | ||| | |||||||||||| |||
Sbjct 35850 TTTTGTTTAAGTAAATAACCTTCCAGTTGCCAAATCTTGTTACGTGCATTTTCATACGCA 35791
Query 27313 ATCTTACGCCCAATT-TCTTCGTTGAAGTTTCCCGGGGATGCACAGGCAGACTCACCAGT 27371
||||| | || || |||| || ||| ||| | || |||||| |||||||| |||||
Sbjct 35790 ATCTTTTGACCGATAATCTT-GTCGAAATTTTCAGGACTTGCACAAGCAGACTCGCCAGT 35732
Query 27372 AACAGTGAAGCCATTCTCCAGAACCAGTACACAGAAAGT 27410
||||||||| || || | || ||| | ||| ||||| ||
Sbjct 35731 AACAGTGAAACCGTTTTTCAAAACAATTACGCAGAAGGT 35693
>seq7305
Length=28244
Score = 100 bits (110), Expect = 1e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 27253 TTCTGCTTAAGCAGGTAACCTTCCAGTAACCAGACCTTATCGATTGCATTTTCATAGGCA 27312
|| || ||||| | |||||||||||| ||| | ||| | |||||||||||| |||
Sbjct 24725 TTTTGTTTAAGTAAATAACCTTCCAGTTGCCAAATCTTGTTACGTGCATTTTCATACGCA 24784
Query 27313 ATCTTACGCCCAAT-TTCTTCGTTGAAGTTTCCCGGGGATGCACAGGCAGACTCACCAGT 27371
||||| | || || |||| || ||| ||| | || |||||| |||||||| |||||
Sbjct 24785 ATCTTTTGACCGATAATCTT-GTCGAAATTTTCAGGACTTGCACAAGCAGACTCGCCAGT 24843
Query 27372 AACAGTGAAGCCATTCTCCAGAACCAGTACACAGAAAGT 27410
||||||||| || || | || ||| | ||| ||||| ||
Sbjct 24844 AACAGTGAAACCGTTTTTCAAAACAATTACGCAGAAGGT 24882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 232056602471169
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |