Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019445.1
Length=44784
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 260 4e-65
seq1205 109 2e-19
seq8280 87.8 5e-13
seq551 87.8 5e-13
seq11405 86.0 2e-12
seq7352 84.2 6e-12
>seq9777
Length=39614
Score = 260 bits (288), Expect = 4e-65
Identities = 420/596 (70%), Gaps = 12/596 (2%)
Strand=Plus/Plus
Query 12443 TCGGGTCACGGCATTGGTAAATCCGCATTCATCTCAATGCTGATCAACTGGGGCATGTCC 12502
||||| |||||||| || || ||||| | | | ||||||||||| |||| | | |
Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582
Query 12503 ACTTGCGAGGATTGTAAGGTCGTGGTGACCGCCAACACCGACAACCAGCTACGAACGAAG 12562
|| | ||| || | ||| || || ||||||||||||| |||||| || ||||||
Sbjct 25583 ACGTTCGAAGACACGCGCGGCGTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAAG 25642
Query 12563 ACCTGGCCGGAAATTATCAAGTGG--TCAAACCTTGCTATCACGAAAGACTGGTTTAC-C 12619
|||||| ||||| | |||||| | ||| | || ||| || |||||| || |
Sbjct 25643 ACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAAGGACTGGGCCACGC 25700
Query 12620 TGTACAGCTACCGCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGAC 12679
|| || || || ||| || |||||| | ||| || ||||||||| ||||| |||
Sbjct 25701 TG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGAC 25759
Query 12680 GCAATCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAA 12739
|| | || ||||| || ||||||| ||||| ||||| || || ||||||||| ||
Sbjct 25760 GCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGG 25819
Query 12740 CGCATCATCGTGGTATTCGATGAAGCGTCGAACATTGCCGATCTGGTGTGGGAGGTAGCA 12799
|||||| | |||| ||||| || || ||| ||| ||||| ||||||||| || ||
Sbjct 25820 CGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCC 25879
Query 12800 GAGGGTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGAAACCCGACG 12859
||||||||||| || ||| | | ||| ||||| ||||||| |||||||| ||| | ||
Sbjct 25880 GAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACC 25939
Query 12860 CGTAACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCG 12919
|| |||||||| || |||||||| || |||||| | || | | ||| | || | |
Sbjct 25940 CGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAG 25999
Query 12920 CAGATTGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAGTTGCAGA---AATGGGTT 12976
||||| |||||||| || || || || ||| | | || || || |||
Sbjct 26000 CAGATCGACAGCCGCACCGTTGAGGGTGTGAAC--CTGGTCGAGGCCGAGCGCAT-GGTG 26056
Query 12977 GATGACTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 13032
|||||||| || ||||||||| | || || ||||| | |||||| | |||||
Sbjct 26057 CGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112
>seq1205
Length=48877
Score = 109 bits (120), Expect = 2e-19
Identities = 237/351 (68%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 12684 TCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCA 12743
|| ||||||| | | ||||||| ||||| |||||||| || || || || |||| ||||
Sbjct 36092 TCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGCAAGCGCA 36151
Query 12744 TCATCGTGGTATTCGATGAAGCGTCGAACATTGCCGATCTGGTGTGGGAGGTAGCAGAGG 12803
|| | || | ||||| || ||||| ||| | | |||||||||||| || |
Sbjct 36152 TCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTCGCGCTCG 36211
Query 12804 GTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGAAACCCGACGCGTA 12863
| ||||| || ||||| || || ||||| | ||| | || ||||| || || || | |
Sbjct 36212 GCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCCACACTCA 36271
Query 12864 ACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCGCAGA 12923
||||||| |||||||| || | |||| || ||||| || |||||
Sbjct 36272 ACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACGCGGCAGA 36331
Query 12924 TTGACAGCCGGACGGTGGAAGGCACTAACAA-ACAGCAGTTGCAGAAATGGGTTGATGA- 12981
| || || || | || || ||||| ||||| | | | | || ||| | | |
Sbjct 36332 TCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGG--TCACCAC 36389
Query 12982 CTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 13032
|||||| | |||||||| |||| || | || ||||||||||| |||||
Sbjct 36390 CTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440
>seq8280
Length=144189
Score = 87.8 bits (96), Expect = 5e-13
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479
||||| | | ||||||| |||||||||||||| ||||||||||||||| |||||| |||
Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029
Query 14480 AACTGAGCTAA 14490
| |||||||||
Sbjct 26030 AGCTGAGCTAA 26040
>seq551
Length=68878
Score = 87.8 bits (96), Expect = 5e-13
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489
||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 2847 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 2904
>seq11405
Length=110570
Score = 86.0 bits (94), Expect = 2e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3615 ACCAACTGTGCTTCGTAGCCTAACGTTCCGTTTACCACATGCGTTTTCTGCGCCACGGCG 3674
|||||||| || || ||||| ||||| ||||| |||| || || ||||| |||||||||
Sbjct 79928 ACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGGGCCACGGCG 79987
Query 3675 AACGGGTTCATTCCCCACTG 3694
|| |||||||| ||||||||
Sbjct 79988 AAGGGGTTCATGCCCCACTG 80007
>seq7352
Length=278960
Score = 84.2 bits (92), Expect = 6e-12
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479
||||| | | |||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214
Query 14480 AACTGAGCTAA 14490
| |||||||||
Sbjct 263215 AGCTGAGCTAA 263225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143161594459468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |