Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq9777 260 4e-65 seq1205 109 2e-19 seq8280 87.8 5e-13 seq551 87.8 5e-13 seq11405 86.0 2e-12 seq7352 84.2 6e-12 >seq9777 Length=39614 Score = 260 bits (288), Expect = 4e-65 Identities = 420/596 (70%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 12443 TCGGGTCACGGCATTGGTAAATCCGCATTCATCTCAATGCTGATCAACTGGGGCATGTCC 12502 ||||| |||||||| || || ||||| | | | ||||||||||| |||| | | | Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582 Query 12503 ACTTGCGAGGATTGTAAGGTCGTGGTGACCGCCAACACCGACAACCAGCTACGAACGAAG 12562 || | ||| || | ||| || || ||||||||||||| |||||| || |||||| Sbjct 25583 ACGTTCGAAGACACGCGCGGCGTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAAG 25642 Query 12563 ACCTGGCCGGAAATTATCAAGTGG--TCAAACCTTGCTATCACGAAAGACTGGTTTAC-C 12619 |||||| ||||| | |||||| | ||| | || ||| || |||||| || | Sbjct 25643 ACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAAGGACTGGGCCACGC 25700 Query 12620 TGTACAGCTACCGCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGAC 12679 || || || || ||| || |||||| | ||| || ||||||||| ||||| ||| Sbjct 25701 TG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGAC 25759 Query 12680 GCAATCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAA 12739 || | || ||||| || ||||||| ||||| ||||| || || ||||||||| || Sbjct 25760 GCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGG 25819 Query 12740 CGCATCATCGTGGTATTCGATGAAGCGTCGAACATTGCCGATCTGGTGTGGGAGGTAGCA 12799 |||||| | |||| ||||| || || ||| ||| ||||| ||||||||| || || Sbjct 25820 CGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCC 25879 Query 12800 GAGGGTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGAAACCCGACG 12859 ||||||||||| || ||| | | ||| ||||| ||||||| |||||||| ||| | || Sbjct 25880 GAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACC 25939 Query 12860 CGTAACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCG 12919 || |||||||| || |||||||| || |||||| | || | | ||| | || | | Sbjct 25940 CGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAG 25999 Query 12920 CAGATTGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAGTTGCAGA---AATGGGTT 12976 ||||| |||||||| || || || || ||| | | || || || ||| Sbjct 26000 CAGATCGACAGCCGCACCGTTGAGGGTGTGAAC--CTGGTCGAGGCCGAGCGCAT-GGTG 26056 Query 12977 GATGACTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 13032 |||||||| || ||||||||| | || || ||||| | |||||| | ||||| Sbjct 26057 CGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCGGCCTGTTCCC 26112 >seq1205 Length=48877 Score = 109 bits (120), Expect = 2e-19 Identities = 237/351 (68%), Gaps = 4/351 (1%) Strand=Plus/Plus Query 12684 TCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCA 12743 || ||||||| | | ||||||| ||||| |||||||| || || || || |||| |||| Sbjct 36092 TCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGCAAGCGCA 36151 Query 12744 TCATCGTGGTATTCGATGAAGCGTCGAACATTGCCGATCTGGTGTGGGAGGTAGCAGAGG 12803 || | || | ||||| || ||||| ||| | | |||||||||||| || | Sbjct 36152 TCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTCGCGCTCG 36211 Query 12804 GTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGAAACCCGACGCGTA 12863 | ||||| || ||||| || || ||||| | ||| | || ||||| || || || | | Sbjct 36212 GCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCCACACTCA 36271 Query 12864 ACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCGCAGA 12923 ||||||| |||||||| || | |||| || ||||| || ||||| Sbjct 36272 ACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACGCGGCAGA 36331 Query 12924 TTGACAGCCGGACGGTGGAAGGCACTAACAA-ACAGCAGTTGCAGAAATGGGTTGATGA- 12981 | || || || | || || ||||| ||||| | | | | || ||| | | | Sbjct 36332 TCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGG--TCACCAC 36389 Query 12982 CTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 13032 |||||| | |||||||| |||| || | || ||||||||||| ||||| Sbjct 36390 CTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440 >seq8280 Length=144189 Score = 87.8 bits (96), Expect = 5e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479 ||||| | | ||||||| |||||||||||||| ||||||||||||||| |||||| ||| Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029 Query 14480 AACTGAGCTAA 14490 | ||||||||| Sbjct 26030 AGCTGAGCTAA 26040 >seq551 Length=68878 Score = 87.8 bits (96), Expect = 5e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 ||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 2847 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 2904 >seq11405 Length=110570 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3615 ACCAACTGTGCTTCGTAGCCTAACGTTCCGTTTACCACATGCGTTTTCTGCGCCACGGCG 3674 |||||||| || || ||||| ||||| ||||| |||| || || ||||| ||||||||| Sbjct 79928 ACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGGGCCACGGCG 79987 Query 3675 AACGGGTTCATTCCCCACTG 3694 || |||||||| |||||||| Sbjct 79988 AAGGGGTTCATGCCCCACTG 80007 >seq7352 Length=278960 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479 ||||| | | |||||||||||||||||||||| ||||||||||||| |||||| ||| Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214 Query 14480 AACTGAGCTAA 14490 | ||||||||| Sbjct 263215 AGCTGAGCTAA 263225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143161594459468