Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019448.1 Length=139806 Score E Sequences producing significant alignments: (Bits) Value seq11759 86.0 6e-12 >seq11759 Length=158816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 219/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 135231 TAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACCCTGA 135290 |||| | || || | ||||| ||| || ||||| || || ||||| ||||||||||| Sbjct 60740 TAAATTGGTTTTCCGTCCTGACTCTGGTGATCCTGTAAAAATCATTTGCGGTGACCCTGA 60799 Query 135291 TGCAGATACTG--AGT-ATGAACGTAAAGGTGCTGTAGAAGTACTTTGGGATACTTTTGG 135347 || || | | ||| | |||||| ||||| || | ||||| | ||||| Sbjct 60800 AGCTGAAATGGGCAGTCCAGCTTATAAAGGCGCTGTGCAATGTTTATGGGAAATCTTTGG 60859 Query 135348 AGGTACTGAAACTGAAAAAGGATATAAAGTACTAGATGAACATGTAGGATTAATCTATGG 135407 || || ||||| || |||| |||||||| || |||| | ||| || || || ||||| Sbjct 60860 CGGAACCGAAACAGATCAAGGCTATAAAGTTTTAAATGAGCGTGTTGGTTTGATTTATGG 60919 Query 135408 TGATTCTATTAACTATGAGCGTGCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTTT 135467 ||| || |||| | || |||||| | ||| | | || | |||| || || | Sbjct 60920 TGACTCGATTACTTTGGAACGTGCTTTAAATATTGTTCAAGGGCTGGAAGCGAAGGGCTA 60979 Query 135468 TGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCTCTTAT--CAATTTAATACTCGT 135525 ||| | ||| | || || || | ||||||| ||||| | ||||| || ||| Sbjct 60980 TGCTTCAAATAATCTGGTCTTTGGCATCGGTAGTTATACTTATAACTATTTA--ACACGT 61037 Query 135526 GATACTCATGGGTTTGCAATCAAAGCAAC 135554 || || ||| |||||| | ||||| || Sbjct 61038 GACACATTTGGTTTTGCAGTTAAAGCCAC 61066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447167010552240