Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019488.1
Length=34117
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 389 9e-104
seq5906 95.1 3e-15
>seq7272
Length=98981
Score = 389 bits (430), Expect = 9e-104
Identities = 1444/2231 (65%), Gaps = 103/2231 (5%)
Strand=Plus/Minus
Query 11865 CCACATCCCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGC 11924
||||||| || || || || |||| ||||| | ||||| | |||||| || ||||
Sbjct 43269 CCACATCGCCGAAGCCACCTGCATTGGCCGGCACCACGCCCATGAGCTGCGGAGGCACGC 43210
Query 11925 GGTGTGCTGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAG 11984
|||| || |||| ||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 43209 GGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCTTGATGTTGAAAAATTCATCCTTGG 43150
Query 11985 CTGCAACCTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACA 12044
| || |||| | || | | |||||| | | || ||| ||| |||||| | |
Sbjct 43149 CCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTTTCTCTTTGCCGCCGGGCGAATGGA 43090
Query 12045 TAAACAGGTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGT 12104
|||||| |||||||| |||||| || |||| ||||| |||||||| | |
Sbjct 43089 AAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAGATTTCAAGGCCTGGCGCAGCGCAT 43030
Query 12105 TCACGTCCTCCTGGTTCTGCG----CGGCGTCAGTCATGTACATGATGAAGCCTGCGTGG 12160
||| || || || ||| ||| || ||| || | |||| | || || |||
Sbjct 43029 CCACATCGTC----TTTTGCCACTTCGGGATCGCTCAGATAGAGGATGTATCCGGCATGG 42974
Query 12161 CTACCGTTAATGTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAA 12220
|| || || |||| ||| || || ||||| || || |||||||| ||| ||||||
Sbjct 42973 CTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTCATTGAGCCAGGCGGAC 42914
Query 12221 GGGATAGCTGACAGATATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTCCATC 12280
| | || | ||| || | |||||| || || || ||||||| | ||| |||| |
Sbjct 42913 TGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTGCACATCGGGCTGGAGG 42854
Query 12281 AGGTGAAAGATGCTGCCTTTGGTGAACTCGTAGGGGGGCGTGGTTAGGCC--GTATTGCA 12338
| ||| | |||||||||| || ||| || || | | ||| || ||
Sbjct 42853 ATGTGGCAAATGCTGCCTTCGGGAAACGTGT------GC-TCTTCCTGCCAGGTGCGGCG 42801
Query 12339 CAAACCAGTAGGTGTCTAAAT-CGATCCCGCGGCGGGTGTATTTCGCCAGTGA-TGGCTC 12396
|||||| || || | |||| |||| | ||||| || |||||| |||| |
Sbjct 42800 GAAACCAAAGAGTTTCAGACCACGATGCCGC--CTTGTGTACTTGGCCAGTACGTGGCGC 42743
Query 12397 CAGCGACAGAATGCCGCCGAGTCGGTTG-GTGCGCTTCTCCAGATAGGCATTACCGAATA 12455
|| | || ||| || || || ||| | | || ||| | ||| |||| ||||| |
Sbjct 42742 -AGGGGCAATGAGCCACCCAGACGATTGCGCGGGCG-CTCAAAGTAGCCATTGCCGAAAA 42685
Query 12456 CCAGATAGTCCTGCACAAACCGGCTGAACGCCTGCT-GGCTAAGAAGTGGATGCGGGATA 12514
| || ||||| | || || ||| || || || | ||||| ||||| |||
Sbjct 42684 CAAGGAAGTCCAGAGCAGCCCA-CTGCACCGTGGCGCGGTTCAGAAGCGGATGAGGGCGC 42626
Query 12515 AAGGTGCTGGTCAGAATGTTGCGTTTTACCGCAATGGGA--GAGCTGTGATGCACTGCGG 12572
| ||||||| || | | | || | || ||| | ||| | || | ||
Sbjct 42625 AGCGTGCTGGCGAGCACCTGGGCCTTGA-----ATTGGATGGCGCTTTCGTGGTGGGTGG 42571
Query 12573 CA-CG-GTAG-GTTCGCGCCAGCCCGTCAAAGCTGACCGGCGGCTCATACCAGCGGTCCA 12629
|| || | || || |||||||| || || ||||||| || | || ||||| |
Sbjct 42570 CAGCGCGCAGCGTGCGCGCCAGACCATCGAAGCTGATGGGGGTTTCGTACCAATCCCCAT 42511
Query 12630 TCTGCACGCATTCCACATAGTCCAGCAGCTCGCGGCGGTCCAGCACCGGGATTGGATCAC 12689
| || ||||||||| || |||| | ||||| ||||||||||| | ||||| |
Sbjct 42510 TGAGCCAGCATTCCACGTAATCCAAGATTTCGCGCCGGTCCAGCACGGCCTCGGGATCGC 42451
Query 12690 CAAAGCTGAAAGCCTCGGCAGTTACGTCTGCGTTTTTAGGCGCCATATCTTCTGTTGGCG 12749
| || ||||||||||||||| | | ||| || ||| | | |||||
Sbjct 42450 CGAAAGAGAAAGCCTCGGCAGTGGC--CGGCGC-------CGTCATGGTGCCCGCTGGCG 42400
Query 12750 TTGTGCTGGTTAAGGCTTCGAGCTCACTCATCAAAAAATCTCCACAATGTTGC---TGGT 12806
|||| || || |||||| ||||||||| | | ||| |||
Sbjct 42399 CTGTGGTG---------------TCTGTCATCAGTAAATCTCCAAAGTCGTGCGACTGGG 42355
Query 12807 ATTGGCG------GATTCGCCCTGCAGCGGTTCGTTAAACAGTGCATGCATCGTTGCCCA 12860
| | || | || ||| |||||| ||||| || |||| ||| |||||
Sbjct 42354 AACGCCGCCCACGGCGACGGCCTCCAGCGGCTCGTTGTCCATCGCATTCATGCAGGCCCA 42295
Query 12861 GGCCAAATCTGCGTGGCTGGCCTCTTCGCTGCGGCTGGCTTCATAGGTTGGACGGTTGCC 12920
||||| ||| ||||||| | ||| | | |||| || ||||||| | |||||
Sbjct 42294 GGCCAGATCCGCGTGGCCTGTCTCGCCACCACGGCCCGCCCCATAGGTCACGCTCTTGCC 42235
Query 12921 GCTGGCGGTGGTGGCGCGGCGGATAGCCATAAAGGACTGCGCA--ATGTCGGTGTGCCCA 12978
| | || | |||| | |||||||| ||||||| | ||| || |||
Sbjct 42234 AGAGCCCGTCATTTCGCGCTTCACGGCCATAAA--ACTGCGCTGCAGGTCCACGTCGCCA 42177
Query 12979 GCGTCAAACTCCAGACGGCGGTGGCTGATAATGTCGTACGCCTTGAGCACCAGGGCATTT 13038
| || ||||| | |||| | | |||| | | |||||| | ||||||| ||
Sbjct 42176 GAATCGAACTCAAAGCGGCCGGCTCGCATAAGGCTTTGCGCCTTCATCACCAGGCGCGTT 42117
Query 13039 TTGACGTTAGGGTTGTAGACAAACTCCCGCACGGCAGGAAAGAACGCTTTTACGTTCTCA 13098
||||| | | |||| || | ||| || || |||||| ||| ||| |||
Sbjct 42116 TTGACCTCCACGCTGTACTGCAATGACTTCACAGCCGGGAAGAACTTTTTCACGATCTGC 42057
Query 13099 TAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGCTGC 13158
|| || || || | || || || || |||| ||| | | ||||||||| | ||
Sbjct 42056 AGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCT 41997
Query 13159 GTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCCA-TCCCGCGCCACTG-ATGAC 13216
|||| | ||| | || ||||| || ||||||| |||| | |||| ||| |
Sbjct 41996 GTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGA-ACTGCATG-C 41939
Query 13217 GCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGTGCCATAACCACGCAGCCTG 13276
||||||| || |||||||| ||||| || |||||| |||| || || ||| |
Sbjct 41938 GCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCG 41879
Query 13277 CGCTGTCACCGTTCTGCGTACCTTTTGCCGGG-TCATAACCGATCCACACTTCGCGCCA- 13334
| ||| || |||| | || ||| ||||| || ||||| || | ||
Sbjct 41878 CCGAGTCGCC------CGTA----TGGCTGGGGTCATAGCCAATCCAGAC---GGGCTTT 41832
Query 13335 --GCCAAACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAGACTTCCCAGCTGTCCACC 13392
||||||||| |||| || | | || |||||| |||| | |||||||||||| |
Sbjct 41831 TGGCCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCA 41772
Query 13393 ATGCA-CGCCTGCAGCTCGCTGAGCGGGAACACGGACGCGAGATCGTCCACGAACTCACA 13451
||| ||| | |||| | |||||||| || | | || || || ||| | ||
Sbjct 41771 TGGCAGCGCAT-CAGCGTGGACAGCGGGAAAACAGCGAAGGTGTCATCGACAAACCCGCA 41713
Query 13452 CATCAGCAGGTTCTGGTATTCGTCCGGGCTG--TACTCCATGCGCAGCTGGTCGAGGTCG 13509
||| |||||||| | |||| || | | | ||||| | |||||| | ||| ||||||
Sbjct 41712 CATGAGCAGGTTGTCCCATTCCTC--GTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCG 41655
Query 13510 AACAGGTTACAGCCGCCGCGCACCGCATCCTCCACGGTGACGATCTGGCGGTACTGCCCG 13569
||||| || |||||||||||| ||||||| ||| ||||| ||||| || | | |
Sbjct 41654 AACAGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTG 41595
Query 13570 TCAGGGCAGAGCAGGCCGCGCGCAAGGTTGCTGTGGGTCAGGTTAATATCCACCTTGTCC 13629
|| || | | ||| | || |||| ||| |||||| | || | ||||
Sbjct 41594 TCCTCGCCGGTGAAGCCTCCAGCCAGGTGCGAATGGCTCAGGTCCAGCTCTATGCGGTCC 41535
Query 13630 GCTTTGGCACGGCCCCGGTTAAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTC 13689
|||||| || | ||| | | | || ||| | || ||| || ||| |
Sbjct 41534 TTTTTGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGC 41475
Query 13690 AGGCTGGAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATGGCCATACCGGAA 13749
|||||| |||||||||||| || | ||||| | ||||| ||||||||||||
Sbjct 41474 AGGCTGCTGGGCGTGGAAAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTG 41415
Query 13750 GCCACTTTGCGCAGTTCCTGGAATTTTGGTATCCAGAAATATTCATCCAGGTACAGATTA 13809
||||| || | ||| ||| ||| || | ||| || ||||||| | || |||||
Sbjct 41414 GCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTG 41355
Query 13810 CCGTGATAGCTCTGCGCCGTGCGGGCGTTGGTGCCGAGAAAGTACAAAGCGGCCCCATTG 13869
||||| || |||||| ||||||||| | ||||| || || |||| | ||| ||||||
Sbjct 41354 CCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTG 41295
Query 13870 GGTAACACCATGGGATCGCCTTTCAGCTCAACATC-CA--CCTCTTTTGCAAAGTCGATG 13926
| || ||||| ||||| |||| || | ||| || ||| || ||||| |||||
Sbjct 41294 CTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGCGATG 41235
Query 13927 ATGTACTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGT 13986
||||||||| || || || ||||| || ||||| ||||| |||||||| |||||
Sbjct 41234 ATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGG 41175
Query 13987 CCGGTCAGCAGGGCGTCAATCAATGCTTCACGGGCAAAATAAAACGTGGCGCCAATCTGG 14046
|| ||| |||||| ||||||| || || ||| | || || |||| || || ||||||
Sbjct 41174 CCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGG 41115
Query 14047 CGCGACTTGAG 14057
||||| |||||
Sbjct 41114 CGCGATTTGAG 41104
>seq5906
Length=1255
Score = 95.1 bits (104), Expect = 3e-15
Identities = 207/308 (67%), Gaps = 4/308 (1%)
Strand=Plus/Minus
Query 27175 CACTGCCATCGTGGGCATGGTCTGCACCGGCGATGATGCTGATGCGTCCGTGTTCCCCCT 27234
||| || ||| | || |||||| || || | || |||||| | | | ||||| ||
Sbjct 649 CACCGCGATCATCGGTATGGTCGCCATCGCGGCCGACGCTGATCCCGCTATCTTCCCGCT 590
Query 27235 CAATAAGCCGGTCCTGCTGACTGATGTGCTCACCGCCAGCGGTAAAGCGGGGGAGTCCGG 27294
| || |||| || | || ||||| ||||||| ||| || ||| | |||
Sbjct 589 CGATCGCCCGGCGCTCATCACCGATGTTGAAACCGCCATCGGCGCCGCCGGGACGGACGG 530
Query 27295 CACGCTGGCCCGCTCGCTGGACGCGATTGCAGATCAGGCAAAACCCGTGACTGTCGTTGT 27354
||||||||||| |||||| ||| || || ||||| || || | | |||||| ||
Sbjct 529 CACGCTGGCCCTGTCGCTGCGCGCCATCGCCGATCATGCTCGCCCGATCATTGTCGTGGT 470
Query 27355 GCGTGTGGCGCAGGGCGAAACCGAAGCGGAAACCACCTCCAATATTATCGG--CGGCGTA 27412
|| ||||| | || || | ||||||||| || |||| | ||||| || | |
Sbjct 469 CCGCGTGGCCGAAGGGGACGATGCGGCGGAAACCGCCAGCAATGTCATCGGTACGACCGA 410
Query 27413 ACTTCCGACGGTAAGAAAACGGGCATGAAAGCGCTACTGTCGGCGCAGTCGCAGCTCGGT 27472
|| |||| | || || || ||| | ||||| ||| |||||||| ||||||| ||
Sbjct 409 --CGCCAACGGCCAAAAGACAGGTATGCAGGCGCTGCTGGCGGCGCAGGCGCAGCTGGGG 352
Query 27473 GTCAAGCC 27480
||||||||
Sbjct 351 GTCAAGCC 344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109033298564882
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