Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq7272 389 9e-104 seq5906 95.1 3e-15 >seq7272 Length=98981 Score = 389 bits (430), Expect = 9e-104 Identities = 1444/2231 (65%), Gaps = 103/2231 (5%) Strand=Plus/Minus Query 11865 CCACATCCCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGC 11924 ||||||| || || || || |||| ||||| | ||||| | |||||| || |||| Sbjct 43269 CCACATCGCCGAAGCCACCTGCATTGGCCGGCACCACGCCCATGAGCTGCGGAGGCACGC 43210 Query 11925 GGTGTGCTGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAG 11984 |||| || |||| ||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 43209 GGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCTTGATGTTGAAAAATTCATCCTTGG 43150 Query 11985 CTGCAACCTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACA 12044 | || |||| | || | | |||||| | | || ||| ||| |||||| | | Sbjct 43149 CCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTTTCTCTTTGCCGCCGGGCGAATGGA 43090 Query 12045 TAAACAGGTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGT 12104 |||||| |||||||| |||||| || |||| ||||| |||||||| | | Sbjct 43089 AAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAGATTTCAAGGCCTGGCGCAGCGCAT 43030 Query 12105 TCACGTCCTCCTGGTTCTGCG----CGGCGTCAGTCATGTACATGATGAAGCCTGCGTGG 12160 ||| || || || ||| ||| || ||| || | |||| | || || ||| Sbjct 43029 CCACATCGTC----TTTTGCCACTTCGGGATCGCTCAGATAGAGGATGTATCCGGCATGG 42974 Query 12161 CTACCGTTAATGTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAA 12220 || || || |||| ||| || || ||||| || || |||||||| ||| |||||| Sbjct 42973 CTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTCATTGAGCCAGGCGGAC 42914 Query 12221 GGGATAGCTGACAGATATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTCCATC 12280 | | || | ||| || | |||||| || || || ||||||| | ||| |||| | Sbjct 42913 TGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTGCACATCGGGCTGGAGG 42854 Query 12281 AGGTGAAAGATGCTGCCTTTGGTGAACTCGTAGGGGGGCGTGGTTAGGCC--GTATTGCA 12338 | ||| | |||||||||| || ||| || || | | ||| || || Sbjct 42853 ATGTGGCAAATGCTGCCTTCGGGAAACGTGT------GC-TCTTCCTGCCAGGTGCGGCG 42801 Query 12339 CAAACCAGTAGGTGTCTAAAT-CGATCCCGCGGCGGGTGTATTTCGCCAGTGA-TGGCTC 12396 |||||| || || | |||| |||| | ||||| || |||||| |||| | Sbjct 42800 GAAACCAAAGAGTTTCAGACCACGATGCCGC--CTTGTGTACTTGGCCAGTACGTGGCGC 42743 Query 12397 CAGCGACAGAATGCCGCCGAGTCGGTTG-GTGCGCTTCTCCAGATAGGCATTACCGAATA 12455 || | || ||| || || || ||| | | || ||| | ||| |||| ||||| | Sbjct 42742 -AGGGGCAATGAGCCACCCAGACGATTGCGCGGGCG-CTCAAAGTAGCCATTGCCGAAAA 42685 Query 12456 CCAGATAGTCCTGCACAAACCGGCTGAACGCCTGCT-GGCTAAGAAGTGGATGCGGGATA 12514 | || ||||| | || || ||| || || || | ||||| ||||| ||| Sbjct 42684 CAAGGAAGTCCAGAGCAGCCCA-CTGCACCGTGGCGCGGTTCAGAAGCGGATGAGGGCGC 42626 Query 12515 AAGGTGCTGGTCAGAATGTTGCGTTTTACCGCAATGGGA--GAGCTGTGATGCACTGCGG 12572 | ||||||| || | | | || | || ||| | ||| | || | || Sbjct 42625 AGCGTGCTGGCGAGCACCTGGGCCTTGA-----ATTGGATGGCGCTTTCGTGGTGGGTGG 42571 Query 12573 CA-CG-GTAG-GTTCGCGCCAGCCCGTCAAAGCTGACCGGCGGCTCATACCAGCGGTCCA 12629 || || | || || |||||||| || || ||||||| || | || ||||| | Sbjct 42570 CAGCGCGCAGCGTGCGCGCCAGACCATCGAAGCTGATGGGGGTTTCGTACCAATCCCCAT 42511 Query 12630 TCTGCACGCATTCCACATAGTCCAGCAGCTCGCGGCGGTCCAGCACCGGGATTGGATCAC 12689 | || ||||||||| || |||| | ||||| ||||||||||| | ||||| | Sbjct 42510 TGAGCCAGCATTCCACGTAATCCAAGATTTCGCGCCGGTCCAGCACGGCCTCGGGATCGC 42451 Query 12690 CAAAGCTGAAAGCCTCGGCAGTTACGTCTGCGTTTTTAGGCGCCATATCTTCTGTTGGCG 12749 | || ||||||||||||||| | | ||| || ||| | | ||||| Sbjct 42450 CGAAAGAGAAAGCCTCGGCAGTGGC--CGGCGC-------CGTCATGGTGCCCGCTGGCG 42400 Query 12750 TTGTGCTGGTTAAGGCTTCGAGCTCACTCATCAAAAAATCTCCACAATGTTGC---TGGT 12806 |||| || || |||||| ||||||||| | | ||| ||| Sbjct 42399 CTGTGGTG---------------TCTGTCATCAGTAAATCTCCAAAGTCGTGCGACTGGG 42355 Query 12807 ATTGGCG------GATTCGCCCTGCAGCGGTTCGTTAAACAGTGCATGCATCGTTGCCCA 12860 | | || | || ||| |||||| ||||| || |||| ||| ||||| Sbjct 42354 AACGCCGCCCACGGCGACGGCCTCCAGCGGCTCGTTGTCCATCGCATTCATGCAGGCCCA 42295 Query 12861 GGCCAAATCTGCGTGGCTGGCCTCTTCGCTGCGGCTGGCTTCATAGGTTGGACGGTTGCC 12920 ||||| ||| ||||||| | ||| | | |||| || ||||||| | ||||| Sbjct 42294 GGCCAGATCCGCGTGGCCTGTCTCGCCACCACGGCCCGCCCCATAGGTCACGCTCTTGCC 42235 Query 12921 GCTGGCGGTGGTGGCGCGGCGGATAGCCATAAAGGACTGCGCA--ATGTCGGTGTGCCCA 12978 | | || | |||| | |||||||| ||||||| | ||| || ||| Sbjct 42234 AGAGCCCGTCATTTCGCGCTTCACGGCCATAAA--ACTGCGCTGCAGGTCCACGTCGCCA 42177 Query 12979 GCGTCAAACTCCAGACGGCGGTGGCTGATAATGTCGTACGCCTTGAGCACCAGGGCATTT 13038 | || ||||| | |||| | | |||| | | |||||| | ||||||| || Sbjct 42176 GAATCGAACTCAAAGCGGCCGGCTCGCATAAGGCTTTGCGCCTTCATCACCAGGCGCGTT 42117 Query 13039 TTGACGTTAGGGTTGTAGACAAACTCCCGCACGGCAGGAAAGAACGCTTTTACGTTCTCA 13098 ||||| | | |||| || | ||| || || |||||| ||| ||| ||| Sbjct 42116 TTGACCTCCACGCTGTACTGCAATGACTTCACAGCCGGGAAGAACTTTTTCACGATCTGC 42057 Query 13099 TAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGCTGC 13158 || || || || | || || || || |||| ||| | | ||||||||| | || Sbjct 42056 AGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCT 41997 Query 13159 GTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCCA-TCCCGCGCCACTG-ATGAC 13216 |||| | ||| | || ||||| || ||||||| |||| | |||| ||| | Sbjct 41996 GTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGA-ACTGCATG-C 41939 Query 13217 GCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGTGCCATAACCACGCAGCCTG 13276 ||||||| || |||||||| ||||| || |||||| |||| || || ||| | Sbjct 41938 GCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCG 41879 Query 13277 CGCTGTCACCGTTCTGCGTACCTTTTGCCGGG-TCATAACCGATCCACACTTCGCGCCA- 13334 | ||| || |||| | || ||| ||||| || ||||| || | || Sbjct 41878 CCGAGTCGCC------CGTA----TGGCTGGGGTCATAGCCAATCCAGAC---GGGCTTT 41832 Query 13335 --GCCAAACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAGACTTCCCAGCTGTCCACC 13392 ||||||||| |||| || | | || |||||| |||| | |||||||||||| | Sbjct 41831 TGGCCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCA 41772 Query 13393 ATGCA-CGCCTGCAGCTCGCTGAGCGGGAACACGGACGCGAGATCGTCCACGAACTCACA 13451 ||| ||| | |||| | |||||||| || | | || || || ||| | || Sbjct 41771 TGGCAGCGCAT-CAGCGTGGACAGCGGGAAAACAGCGAAGGTGTCATCGACAAACCCGCA 41713 Query 13452 CATCAGCAGGTTCTGGTATTCGTCCGGGCTG--TACTCCATGCGCAGCTGGTCGAGGTCG 13509 ||| |||||||| | |||| || | | | ||||| | |||||| | ||| |||||| Sbjct 41712 CATGAGCAGGTTGTCCCATTCCTC--GTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCG 41655 Query 13510 AACAGGTTACAGCCGCCGCGCACCGCATCCTCCACGGTGACGATCTGGCGGTACTGCCCG 13569 ||||| || |||||||||||| ||||||| ||| ||||| ||||| || | | | Sbjct 41654 AACAGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTG 41595 Query 13570 TCAGGGCAGAGCAGGCCGCGCGCAAGGTTGCTGTGGGTCAGGTTAATATCCACCTTGTCC 13629 || || | | ||| | || |||| ||| |||||| | || | |||| Sbjct 41594 TCCTCGCCGGTGAAGCCTCCAGCCAGGTGCGAATGGCTCAGGTCCAGCTCTATGCGGTCC 41535 Query 13630 GCTTTGGCACGGCCCCGGTTAAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTC 13689 |||||| || | ||| | | | || ||| | || ||| || ||| | Sbjct 41534 TTTTTGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGC 41475 Query 13690 AGGCTGGAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATGGCCATACCGGAA 13749 |||||| |||||||||||| || | ||||| | ||||| |||||||||||| Sbjct 41474 AGGCTGCTGGGCGTGGAAAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTG 41415 Query 13750 GCCACTTTGCGCAGTTCCTGGAATTTTGGTATCCAGAAATATTCATCCAGGTACAGATTA 13809 ||||| || | ||| ||| ||| || | ||| || ||||||| | || ||||| Sbjct 41414 GCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTG 41355 Query 13810 CCGTGATAGCTCTGCGCCGTGCGGGCGTTGGTGCCGAGAAAGTACAAAGCGGCCCCATTG 13869 ||||| || |||||| ||||||||| | ||||| || || |||| | ||| |||||| Sbjct 41354 CCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTG 41295 Query 13870 GGTAACACCATGGGATCGCCTTTCAGCTCAACATC-CA--CCTCTTTTGCAAAGTCGATG 13926 | || ||||| ||||| |||| || | ||| || ||| || ||||| ||||| Sbjct 41294 CTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGCGATG 41235 Query 13927 ATGTACTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGT 13986 ||||||||| || || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 41234 ATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGG 41175 Query 13987 CCGGTCAGCAGGGCGTCAATCAATGCTTCACGGGCAAAATAAAACGTGGCGCCAATCTGG 14046 || ||| |||||| ||||||| || || ||| | || || |||| || || |||||| Sbjct 41174 CCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGG 41115 Query 14047 CGCGACTTGAG 14057 ||||| ||||| Sbjct 41114 CGCGATTTGAG 41104 >seq5906 Length=1255 Score = 95.1 bits (104), Expect = 3e-15 Identities = 207/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 27175 CACTGCCATCGTGGGCATGGTCTGCACCGGCGATGATGCTGATGCGTCCGTGTTCCCCCT 27234 ||| || ||| | || |||||| || || | || |||||| | | | ||||| || Sbjct 649 CACCGCGATCATCGGTATGGTCGCCATCGCGGCCGACGCTGATCCCGCTATCTTCCCGCT 590 Query 27235 CAATAAGCCGGTCCTGCTGACTGATGTGCTCACCGCCAGCGGTAAAGCGGGGGAGTCCGG 27294 | || |||| || | || ||||| ||||||| ||| || ||| | ||| Sbjct 589 CGATCGCCCGGCGCTCATCACCGATGTTGAAACCGCCATCGGCGCCGCCGGGACGGACGG 530 Query 27295 CACGCTGGCCCGCTCGCTGGACGCGATTGCAGATCAGGCAAAACCCGTGACTGTCGTTGT 27354 ||||||||||| |||||| ||| || || ||||| || || | | |||||| || Sbjct 529 CACGCTGGCCCTGTCGCTGCGCGCCATCGCCGATCATGCTCGCCCGATCATTGTCGTGGT 470 Query 27355 GCGTGTGGCGCAGGGCGAAACCGAAGCGGAAACCACCTCCAATATTATCGG--CGGCGTA 27412 || ||||| | || || | ||||||||| || |||| | ||||| || | | Sbjct 469 CCGCGTGGCCGAAGGGGACGATGCGGCGGAAACCGCCAGCAATGTCATCGGTACGACCGA 410 Query 27413 ACTTCCGACGGTAAGAAAACGGGCATGAAAGCGCTACTGTCGGCGCAGTCGCAGCTCGGT 27472 || |||| | || || || ||| | ||||| ||| |||||||| ||||||| || Sbjct 409 --CGCCAACGGCCAAAAGACAGGTATGCAGGCGCTGCTGGCGGCGCAGGCGCAGCTGGGG 352 Query 27473 GTCAAGCC 27480 |||||||| Sbjct 351 GTCAAGCC 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109033298564882