Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8995 194 3e-44 seq6459 178 2e-39 seq1947 98.7 2e-15 seq13960 95.1 2e-14 >seq8995 Length=8301158 Score = 194 bits (214), Expect = 3e-44 Identities = 545/831 (66%), Gaps = 17/831 (2%) Strand=Plus/Plus Query 47852 ACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAG 47911 ||||| |||||||||||||| ||||||||||||| || || || ||||| ||| || Sbjct 6971389 ACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAAC 6971448 Query 47912 GGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG---ATCCGCG 47968 || || | || | ||| | | ||||| || |||||| | ||| || Sbjct 6971449 GGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCT---CCAGCATAAGTCTATCTGCC 6971505 Query 47969 ACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAA 48028 ||| |||||||||| | ||| | ||| ||||| || ||||| ||| |||| Sbjct 6971506 ACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGG 6971565 Query 48029 GCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGG 48088 |||| || || ||||||| |||||| || || | | | || | ||| || | Sbjct 6971566 GCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTC 6971625 Query 48089 GACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGC 48148 | || ||||||| |||||| ||| | | || ||||| |||||| | |||| Sbjct 6971626 TGTTTCGAAGGTTTGTGCAACAGGTGTTTGA---ACATCAGGCAGGTAAAGTCACAGTGC 6971682 Query 48149 AAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTC 48208 || || || || | ||| || || | ||||| || ||| |||||||| | || | Sbjct 6971683 AAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGT 6971742 Query 48209 TGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCG 48268 | ||||||||||| || | ||| ||||| || || ||||||||||| |||||||| || Sbjct 6971743 TTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCA 6971802 Query 48269 AACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCA 48327 || || | | ||||| | | ||| | ||||| ||||| | ||| ||||| Sbjct 6971803 AAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAAG-GCCCA 6971861 Query 48328 GTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTC 48387 |||||||||||||| | || ||||||||||| ||||| |||||| | | || Sbjct 6971862 ATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTC 6971921 Query 48388 ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATT 48444 | || || || || | |||| || | ||||| ||||| || | || Sbjct 6971922 TTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACT---ATACATTTCAGAATGTATGTT 6971978 Query 48445 CTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGA 48504 || || || || ||||| || ||||| ||||| | ||| |||||| | Sbjct 6971979 TTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCT 6972038 Query 48505 GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGAC 48564 || | ||||| || || ||||| ||||| ||||| || |||||||| || || || Sbjct 6972039 AAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCAC 6972098 Query 48565 ATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCC 48624 ||| || |||| | ||| | | | || || | |||| ||| | ||| ||| Sbjct 6972099 ATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGA 6972158 Query 48625 CAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||||| || || | ||||| ||||| || ||||| || ||||| Sbjct 6972159 AAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 6972209 Score = 179 bits (198), Expect = 7e-40 Identities = 367/541 (68%), Gaps = 11/541 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||||||||||||| || || || || Sbjct 6968508 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6968567 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| || || || | || | ||| | | ||||| || |||||| Sbjct 6968568 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCT---CCAGCAT 6968624 Query 47959 GTG---ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | ||| || ||| |||||||||| | ||| | ||| ||||| || ||||| Sbjct 6968625 AAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAG 6968684 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| |||| |||| || || ||||||| |||||| || || | | | || Sbjct 6968685 CTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTAT 6968744 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||| || | | || ||||||| |||||| ||| | | || ||||| Sbjct 6968745 TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGA---ACATCAGGCAGGT 6968801 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | |||||| || || || | ||| || || | ||||| || ||| ||||| Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6968861 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| || | ||| ||||| || || ||||||||||| Sbjct 6968862 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6968921 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||||| || || || | | ||||| | | ||| | ||||| |||| Sbjct 6968922 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6968981 Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| |||||||||||||| | || ||||||||||| ||||| ||||| Sbjct 6968982 GCGCAAG-GCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGA 6969040 Query 48375 G 48375 | Sbjct 6969041 G 6969041 >seq6459 Length=5086755 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 48118 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 48059 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || |||||||| || ||||| || | |||||| |||||| Sbjct 48058 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 47999 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 47998 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 47939 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 47938 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 47879 Query 241625 GAC 241627 ||| Sbjct 47878 GAC 47876 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || |||||||| ||||||| Sbjct 48081 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 48022 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 48021 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 47967 >seq1947 Length=3202959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | ||||| || | ||||| |||| ||| Sbjct 3172510 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 3172451 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 3172450 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 3172391 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 3172390 ATGGGGGAC 3172382 >seq13960 Length=3940437 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || |||||||||||||||||| |||||| |||| |||||| ||| Sbjct 2057895 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 2057954 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 2057955 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 2058013 Query 213647 GGAC 213650 ||| Sbjct 2058014 AGAC 2058017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931357450594560