Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 194 3e-44
seq6459 178 2e-39
seq1947 98.7 2e-15
seq13960 95.1 2e-14
>seq8995
Length=8301158
Score = 194 bits (214), Expect = 3e-44
Identities = 545/831 (66%), Gaps = 17/831 (2%)
Strand=Plus/Plus
Query 47852 ACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAG 47911
||||| |||||||||||||| ||||||||||||| || || || ||||| ||| ||
Sbjct 6971389 ACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAAC 6971448
Query 47912 GGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG---ATCCGCG 47968
|| || | || | ||| | | ||||| || |||||| | ||| ||
Sbjct 6971449 GGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCT---CCAGCATAAGTCTATCTGCC 6971505
Query 47969 ACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAA 48028
||| |||||||||| | ||| | ||| ||||| || ||||| ||| ||||
Sbjct 6971506 ACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGG 6971565
Query 48029 GCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGG 48088
|||| || || ||||||| |||||| || || | | | || | ||| || |
Sbjct 6971566 GCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTC 6971625
Query 48089 GACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGC 48148
| || ||||||| |||||| ||| | | || ||||| |||||| | ||||
Sbjct 6971626 TGTTTCGAAGGTTTGTGCAACAGGTGTTTGA---ACATCAGGCAGGTAAAGTCACAGTGC 6971682
Query 48149 AAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTC 48208
|| || || || | ||| || || | ||||| || ||| |||||||| | || |
Sbjct 6971683 AAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGT 6971742
Query 48209 TGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCG 48268
| ||||||||||| || | ||| ||||| || || ||||||||||| |||||||| ||
Sbjct 6971743 TTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCA 6971802
Query 48269 AACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCA 48327
|| || | | ||||| | | ||| | ||||| ||||| | ||| |||||
Sbjct 6971803 AAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAAG-GCCCA 6971861
Query 48328 GTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTC 48387
|||||||||||||| | || ||||||||||| ||||| |||||| | | ||
Sbjct 6971862 ATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTC 6971921
Query 48388 ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATT 48444
| || || || || | |||| || | ||||| ||||| || | ||
Sbjct 6971922 TTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACT---ATACATTTCAGAATGTATGTT 6971978
Query 48445 CTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGA 48504
|| || || || ||||| || ||||| ||||| | ||| |||||| |
Sbjct 6971979 TTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCT 6972038
Query 48505 GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGAC 48564
|| | ||||| || || ||||| ||||| ||||| || |||||||| || || ||
Sbjct 6972039 AAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCAC 6972098
Query 48565 ATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCC 48624
||| || |||| | ||| | | | || || | |||| ||| | ||| |||
Sbjct 6972099 ATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGA 6972158
Query 48625 CAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675
|||||||| || || | ||||| ||||| || ||||| || |||||
Sbjct 6972159 AAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 6972209
Score = 179 bits (198), Expect = 7e-40
Identities = 367/541 (68%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| |||||||||||||| ||||||||||||| || || || ||
Sbjct 6968508 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6968567
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||| ||| || || || | || | ||| | | ||||| || ||||||
Sbjct 6968568 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCT---CCAGCAT 6968624
Query 47959 GTG---ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| ||| || ||| |||||||||| | ||| | ||| ||||| || |||||
Sbjct 6968625 AAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAG 6968684
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
||| |||| |||| || || ||||||| |||||| || || | | | ||
Sbjct 6968685 CTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTAT 6968744
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
| ||| || | | || ||||||| |||||| ||| | | || |||||
Sbjct 6968745 TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGA---ACATCAGGCAGGT 6968801
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
|||||| | |||||| || || || | ||| || || | ||||| || ||| |||||
Sbjct 6968802 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 6968861
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| | || | | ||||||||||| || | ||| ||||| || || |||||||||||
Sbjct 6968862 CATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCC 6968921
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
|||||||| || || || | | ||||| | | ||| | ||||| ||||
Sbjct 6968922 TTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCA 6968981
Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
| | ||| ||||| |||||||||||||| | || ||||||||||| ||||| |||||
Sbjct 6968982 GCGCAAG-GCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGA 6969040
Query 48375 G 48375
|
Sbjct 6969041 G 6969041
>seq6459
Length=5086755
Score = 178 bits (196), Expect = 2e-39
Identities = 185/243 (76%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| | || ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 48118 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 48059
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || |||||||| || ||||| || | |||||| ||||||
Sbjct 48058 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 47999
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 47998 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 47939
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| ||
Sbjct 47938 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 47879
Query 241625 GAC 241627
|||
Sbjct 47878 GAC 47876
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | || || |||||||| |||||||
Sbjct 48081 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 48022
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 48021 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 47967
>seq1947
Length=3202959
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||||||||| | ||||| || | ||||| |||| |||
Sbjct 3172510 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 3172451
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 3172450 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 3172391
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 3172390 ATGGGGGAC 3172382
>seq13960
Length=3940437
Score = 95.1 bits (104), Expect = 2e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||||| || || |||||||||||||||||| |||||| |||| |||||| |||
Sbjct 2057895 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 2057954
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 2057955 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 2058013
Query 213647 GGAC 213650
|||
Sbjct 2058014 AGAC 2058017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931357450594560
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