Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8995 168 1e-36 seq7661 96.9 6e-15 seq608 93.3 8e-14 >seq8995 Length=8301158 Score = 168 bits (186), Expect = 1e-36 Identities = 410/610 (67%), Gaps = 21/610 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | || Sbjct 6972221 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGAC 6972162 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | |||| | || || | || || ||| ||||| | Sbjct 6972161 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAGAT--ATTTTATTT 6972104 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | ||| |||| ||||||||||| |||||| ||||| || || || || ||| Sbjct 6972103 CCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 6972044 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | || | | ||||| ||| ||| ||||| |||||||| || ||||| || || Sbjct 6972043 GGTTTAGCCAAGAAGTTCAGATTACC--GAGGCTCCTTGTTTCTATGGCTTCCAAATTGC 6971986 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 ||| ||||| | || ||||| ||||| | || || || || ||||||| ||| Sbjct 6971985 CATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAAGA 6971929 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | || || || || || |||||| ||| || || | | |||| ||| Sbjct 6971928 TTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAA 6971869 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGG 25885 ||| |||||| || |||| | | || || ||||| | ||| || || ||| Sbjct 6971868 GGCAGATTGGGCCTTGCGCTGGA-CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGG 6971810 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||||||||| ||||| |||||||| || |||||| |||||| | || ||||||| Sbjct 6971809 TAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGC 6971750 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | | | |||| ||||| || || |||||||| || || || ||||| || Sbjct 6971749 TCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||| | ||| | || ||| |||||||| | | || ||| || | ||||||||| Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCA---AACACCTGTTGCACAAACCT 6971634 Query 26065 TCTCAAGAGA 26074 || || ||| Sbjct 6971633 TCGAAACAGA 6971624 Score = 136 bits (150), Expect = 7e-27 Identities = 308/464 (66%), Gaps = 15/464 (3%) Strand=Plus/Minus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 ||||| | ||| || || |||||||||||||||| ||||| |||||||| || |||| Sbjct 6968963 GCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGT 6968904 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTC 25982 || |||||| | || |||||||||||| | | | |||| ||||| || || ||||| Sbjct 6968903 TCTTTTGCGTCTATATTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTC 6968845 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| || || || ||||| || |||||| | ||| | || ||| |||||||| | | || Sbjct 6968844 CAATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCA- 6968786 Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102 ||| || | ||||||||||| || ||| || | || ||| | || || Sbjct 6968785 --AACACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGT 6968728 Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162 ||| || ||||||| | | || ||||| Sbjct 6968727 TAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTG 6968668 Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGA---CCATCTGCTGTGCCAGCTGGG 26219 || | |||| || ||||| |||| ||||| || | | ||||| ||||||| Sbjct 6968667 CACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTG---GAGCTGGG 6968611 Query 26220 -ACTCGCCAGACTCT-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTG 26277 | || || | | | |||| || ||||| |||||||||||||| || || || Sbjct 6968610 CTTTAGCAAGGTTTTCAAAGTA--GAAAATCCGTTTGACTTTATGGAAAATATTTCACTG 6968553 Query 26278 GAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || |||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 6968552 GAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 6968509 >seq7661 Length=1898141 Score = 96.9 bits (106), Expect = 6e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 818474 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 818533 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 818534 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 818592 Query 26002 GACGAGG 26008 || |||| Sbjct 818593 GATGAGG 818599 >seq608 Length=3558542 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 2088474 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 2088533 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 2088534 TCTGGCTAAAG-AAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 2088592 Query 25999 AGGGACGA 26006 || || || Sbjct 2088593 AGAGATGA 2088600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928669956576960