Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 168 1e-36
seq7661 96.9 6e-15
seq608 93.3 8e-14
>seq8995
Length=8301158
Score = 168 bits (186), Expect = 1e-36
Identities = 410/610 (67%), Gaps = 21/610 (3%)
Strand=Plus/Minus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | ||
Sbjct 6972221 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGAC 6972162
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591
|| |||||||||| | |||| | || || | || || ||| ||||| |
Sbjct 6972161 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAGAT--ATTTTATTT 6972104
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
| ||| |||| ||||||||||| |||||| ||||| || || || || |||
Sbjct 6972103 CCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 6972044
Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709
| || | | ||||| ||| ||| ||||| |||||||| || ||||| || ||
Sbjct 6972043 GGTTTAGCCAAGAAGTTCAGATTACC--GAGGCTCCTTGTTTCTATGGCTTCCAAATTGC 6971986
Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766
||| ||||| | || ||||| ||||| | || || || || ||||||| |||
Sbjct 6971985 CATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAAGA 6971929
Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826
| || || || || || |||||| ||| || || | | |||| |||
Sbjct 6971928 TTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAA 6971869
Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGG 25885
||| |||||| || |||| | | || || ||||| | ||| || || |||
Sbjct 6971868 GGCAGATTGGGCCTTGCGCTGGA-CTGGGGACAAAGAAGCTACATATGGAGAACGTGTGG 6971810
Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945
||||||||||||| ||||| |||||||| || |||||| |||||| | || |||||||
Sbjct 6971809 TAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGC 6971750
Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004
||||| | | | |||| ||||| || || |||||||| || || || ||||| ||
Sbjct 6971749 TCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691
Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064
|||||| | ||| | || ||| |||||||| | | || ||| || | |||||||||
Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCA---AACACCTGTTGCACAAACCT 6971634
Query 26065 TCTCAAGAGA 26074
|| || |||
Sbjct 6971633 TCGAAACAGA 6971624
Score = 136 bits (150), Expect = 7e-27
Identities = 308/464 (66%), Gaps = 15/464 (3%)
Strand=Plus/Minus
Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923
||||| | ||| || || |||||||||||||||| ||||| |||||||| || ||||
Sbjct 6968963 GCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGT 6968904
Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTC 25982
|| |||||| | || |||||||||||| | | | |||| ||||| || || |||||
Sbjct 6968903 TCTTTTGCGTCTATATTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTC 6968845
Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042
||| || || || ||||| || |||||| | ||| | || ||| |||||||| | | ||
Sbjct 6968844 CAATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCA- 6968786
Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102
||| || | ||||||||||| || ||| || | || ||| | || ||
Sbjct 6968785 --AACACCTGTTGCACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGT 6968728
Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162
||| || ||||||| | | || |||||
Sbjct 6968727 TAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTG 6968668
Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGA---CCATCTGCTGTGCCAGCTGGG 26219
|| | |||| || ||||| |||| ||||| || | | ||||| |||||||
Sbjct 6968667 CACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTG---GAGCTGGG 6968611
Query 26220 -ACTCGCCAGACTCT-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTG 26277
| || || | | | |||| || ||||| |||||||||||||| || || ||
Sbjct 6968610 CTTTAGCAAGGTTTTCAAAGTA--GAAAATCCGTTTGACTTTATGGAAAATATTTCACTG 6968553
Query 26278 GAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|| |||||||| ||||||||||| ||||| || ||||| |||||
Sbjct 6968552 GAGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 6968509
>seq7661
Length=1898141
Score = 96.9 bits (106), Expect = 6e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||||||||||||||| ||||| |||||||| || |||||| |||||| | || ||||
Sbjct 818474 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 818533
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
|||||||| | | | |||| ||||| || || |||||||| || || || |||||
Sbjct 818534 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 818592
Query 26002 GACGAGG 26008
|| ||||
Sbjct 818593 GATGAGG 818599
>seq608
Length=3558542
Score = 93.3 bits (102), Expect = 8e-14
Identities = 99/128 (77%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| |||| |||||||||||||| || || || || ||| || || ||||| || || |
Sbjct 2088474 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 2088533
Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998
||||||| ||| | ||| |||| |||||| || || |||||||| ||||||||||||
Sbjct 2088534 TCTGGCTAAAG-AAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 2088592
Query 25999 AGGGACGA 26006
|| || ||
Sbjct 2088593 AGAGATGA 2088600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928669956576960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |