Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq13424 84.2 3e-11 seq8424 84.2 3e-11 >seq13424 Length=92847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 167464 AATGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAA 167523 ||||||||||| || ||||||||||||| || | | || ||||||| || | ||||| | Sbjct 91400 AATGGTCGGGGAGACAGGATTCGAACCTGCGACATCCTGCTCCCAAAGCAGGCGCGCT-A 91458 Query 167524 CCAGACTGCGCTACACCCCGA 167544 |||||||||||||| |||||| Sbjct 91459 CCAGACTGCGCTACTCCCCGA 91479 >seq8424 Length=263062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 167466 TGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACC 167525 ||||||| ||| ||||||||||||| || |||| || ||||||| || ||||||| ||| Sbjct 49809 TGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGGTGCGCT-ACC 49867 Query 167526 AGACTGCGCTACACCCCG 167543 || ||||||||||| ||| Sbjct 49868 AGGCTGCGCTACACTCCG 49885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584827492808520