Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq13424 104 2e-17 seq7041 84.2 2e-11 seq9313 82.4 8e-11 >seq13424 Length=92847 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 15400 ATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCA 15459 |||||| | ||||||||| |||||||||||||||||||||||||||||| | ||||||| Sbjct 91480 ATCGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCG 91421 Query 15460 AATCCTGTATTCCCGAC 15476 |||||||| | |||||| Sbjct 91420 AATCCTGTCTCCCCGAC 91404 >seq7041 Length=191181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113 ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| || Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGC 50831 >seq9313 Length=323745 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 26910 ATGCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCCCTAGTGGCGT 26969 ||||| | ||||||||| |||||||||||| || ||||||| || ||| || | ||||| Sbjct 255802 ATGCGGATGTGGCGGAACTGGTAGACGCCCCGGATTTAGGTTCCGGTG-CCGAAAGGCGT 255744 Query 26970 GAAGGTTCAAGTCCTTTCTTGCGCATCAGTCT 27001 | |||||| |||||| || | || | |||||| Sbjct 255743 GGAGGTTCGAGTCCTCTCATCCGTACCAGTCT 255712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516382779096000