Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq13424 104 2e-17
seq7041 84.2 2e-11
seq9313 82.4 8e-11
>seq13424
Length=92847
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 15400 ATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCA 15459
|||||| | ||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 91480 ATCGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCG 91421
Query 15460 AATCCTGTATTCCCGAC 15476
|||||||| | ||||||
Sbjct 91420 AATCCTGTCTCCCCGAC 91404
>seq7041
Length=191181
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113
||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGC 50831
>seq9313
Length=323745
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/92 (80%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 26910 ATGCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCCCTAGTGGCGT 26969
||||| | ||||||||| |||||||||||| || ||||||| || ||| || | |||||
Sbjct 255802 ATGCGGATGTGGCGGAACTGGTAGACGCCCCGGATTTAGGTTCCGGTG-CCGAAAGGCGT 255744
Query 26970 GAAGGTTCAAGTCCTTTCTTGCGCATCAGTCT 27001
| |||||| |||||| || | || | ||||||
Sbjct 255743 GGAGGTTCGAGTCCTCTCATCCGTACCAGTCT 255712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516382779096000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |