Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019519.1 Length=69391 Score E Sequences producing significant alignments: (Bits) Value seq10097 224 4e-54 >seq10097 Length=214583 Score = 224 bits (248), Expect = 4e-54 Identities = 190/234 (81%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 11698 CATGCCGAGTGCTGCCATGTACGTTTCGAGAATTGTTTCTTCTTCAAGGCGCTCATTCGC 11757 |||||| ||||| ||||| || || | || || |||||||| |||| ||||||||| || Sbjct 95821 CATGCCAAGTGCGGCCATATAGGTCTGAAGGATGGTTTCTTCCTCAATGCGCTCATTGGC 95880 Query 11758 ATCTTTTTTACGAATGCCGATGATTTTGCGAATCGCCTTGGTATCGTAGCCGCGACCCTT 11817 ||| || || || | | |||||| |||| ||||||||||||||||| || || ||||| Sbjct 95881 ATCCTTCTTGCGCAAACGGATGATGGTGCGGATCGCCTTGGTATCGTAACCACGGCCCTT 95940 Query 11818 GGCTTCACTCATGACGTCTTTGATATCGCCCTGAATAGCTGCTTTTTCTTCTTCAAGGCG 11877 || |||| |||||| || ||||||||||||||||| || || |||||||| || || || Sbjct 95941 CGCCTCACCCATGACATCCTTGATATCGCCCTGAATGGCGGCCTTTTCTTCCTCGAGACG 96000 Query 11878 CTCGACGCGCTCAATGAATTGACGGAGTTCCGCTGCGGCTACCGTTTCCGTGGT 11931 |||||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 96001 CTCGACGCGCTCGATGAACTGACGCAGTTCGGCGGCGGCAACGGTTTCTGTGGT 96054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221885669501048