Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq6714 122 2e-23 >seq6714 Length=1758414 Score = 122 bits (134), Expect = 2e-23 Identities = 350/536 (65%), Gaps = 27/536 (5%) Strand=Plus/Minus Query 27180 TCCCGGCGTTCCTGACCACCTACATCGACCCGAAAATGATCGAGGTACTGGTTGCCCCGA 27239 |||||||| | | || ||||| |||| ||| || ||||| ||| || | || | Sbjct 807973 TCCCGGCGCTGTTCACGACCTATGTCGATCCGGAAGTGATCCGGGTTCTTCAGTCTCCCA 807914 Query 27240 TCAAGGCAGCCGAGGCAGTCGGTTCCGAGGTGAAGAAAGGCGACTGGATCACCGAAACCG 27299 ||||| || || |||| ||| ||| |||||||||||| ||| | || | Sbjct 807913 ACAAGGGCGCTGACATCCTCGG---CGAACGCAAGGAAGGCGACTGGACGACCCAGACAG 807857 Query 27300 CCATGTTCCCGGTTGTGGAATCCACCGGCCAGACCGCTGCATATGGTGACTACAACAACT 27359 ||||||||| || |||||| |||||| || | || || ||| | ||||| Sbjct 807856 CCATGTTCCTCGTCGTGGAAAACACCGGTGAGGTGTCCAGCTACGGCGACCAGAACAATG 807797 Query 27360 CCGGCTCCACCGGCGTGAACACCAACTTCCCGCAGCGCCAGAGCTTCCATTACCAGACCG 27419 |||| | | || ||| ||| ||||||||||||||| || | | ||||||| Sbjct 807796 TCGGCATGTCGGACGCGAATGCCACGTTCCCGCAGCGCCAGTCCTATCTGTTCCAGACCA 807737 Query 27420 TCTCCCAGTGGGGCGA----GAAGGGGCTGGAGCGTGCAGGCGCCGCCCGTATCGACTGG 27475 || | | | ||||| ||| |||| | | || | || || | ||||| Sbjct 807736 TCATCGAATATGGCGATCTTGAACAGGCTCG--CATGGCGACG--GCAAAGCTGAACTGG 807681 Query 27476 GC-------AAGCCG-TGTCGGGATCGCCTCCGTGCTGACCCTGAACAAGTTCCAGAACA 27527 | |||| | |||||| ||| || || |||| |||||||||| | Sbjct 807680 GTTGCTGAAAAGCAGATGTCGG--------CCGCACTAACGCTGAGCAAGTTCCAGGATT 807629 Query 27528 AGACCTACCTCTTCGGTGTGGCTGGTTTGCAGAACTACGGCATGCTGAACGACCCAGCCC 27587 | ||||| | | |||||| |||||| |||||||||| ||| |||| || || || |||| Sbjct 807628 ACACCTATCACAACGGTGTTGCTGGTCTGCAGAACTATGGCCTGCTCAATGATCCGGCCC 807569 Query 27588 TGCCCGCCAACCTGACCCCTGGCACCAAGGCGGCAGGCGGCACCACCTGGTCCACCGTTG 27647 || | || |||||||| | ||| ||||| || || ||| |||||| ||| | | Sbjct 807568 TGTCGGCTCCGCTGACCCCGGCCACGAAGGCAGCGGGTGGCGTGACCTGGATCACGGGCG 807509 Query 27648 CTGGCAAGCCCAACGCAACCGCGCTGGAAGTGCTGGCGGACATCCAGGCCATGTTC 27703 | ||| ||| || || || |||||| | ||||||||||||||||| ||| Sbjct 807508 CCGGCGTCATCAATGCCACGGCCAATGAAGTGTTCGCGGACATCCAGGCCATCTTC 807453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139216700033854