Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019527.1
Length=43551
Score E
Sequences producing significant alignments: (Bits) Value
seq6714 122 2e-23
>seq6714
Length=1758414
Score = 122 bits (134), Expect = 2e-23
Identities = 350/536 (65%), Gaps = 27/536 (5%)
Strand=Plus/Minus
Query 27180 TCCCGGCGTTCCTGACCACCTACATCGACCCGAAAATGATCGAGGTACTGGTTGCCCCGA 27239
|||||||| | | || ||||| |||| ||| || ||||| ||| || | || |
Sbjct 807973 TCCCGGCGCTGTTCACGACCTATGTCGATCCGGAAGTGATCCGGGTTCTTCAGTCTCCCA 807914
Query 27240 TCAAGGCAGCCGAGGCAGTCGGTTCCGAGGTGAAGAAAGGCGACTGGATCACCGAAACCG 27299
||||| || || |||| ||| ||| |||||||||||| ||| | || |
Sbjct 807913 ACAAGGGCGCTGACATCCTCGG---CGAACGCAAGGAAGGCGACTGGACGACCCAGACAG 807857
Query 27300 CCATGTTCCCGGTTGTGGAATCCACCGGCCAGACCGCTGCATATGGTGACTACAACAACT 27359
||||||||| || |||||| |||||| || | || || ||| | |||||
Sbjct 807856 CCATGTTCCTCGTCGTGGAAAACACCGGTGAGGTGTCCAGCTACGGCGACCAGAACAATG 807797
Query 27360 CCGGCTCCACCGGCGTGAACACCAACTTCCCGCAGCGCCAGAGCTTCCATTACCAGACCG 27419
|||| | | || ||| ||| ||||||||||||||| || | | |||||||
Sbjct 807796 TCGGCATGTCGGACGCGAATGCCACGTTCCCGCAGCGCCAGTCCTATCTGTTCCAGACCA 807737
Query 27420 TCTCCCAGTGGGGCGA----GAAGGGGCTGGAGCGTGCAGGCGCCGCCCGTATCGACTGG 27475
|| | | | ||||| ||| |||| | | || | || || | |||||
Sbjct 807736 TCATCGAATATGGCGATCTTGAACAGGCTCG--CATGGCGACG--GCAAAGCTGAACTGG 807681
Query 27476 GC-------AAGCCG-TGTCGGGATCGCCTCCGTGCTGACCCTGAACAAGTTCCAGAACA 27527
| |||| | |||||| ||| || || |||| |||||||||| |
Sbjct 807680 GTTGCTGAAAAGCAGATGTCGG--------CCGCACTAACGCTGAGCAAGTTCCAGGATT 807629
Query 27528 AGACCTACCTCTTCGGTGTGGCTGGTTTGCAGAACTACGGCATGCTGAACGACCCAGCCC 27587
| ||||| | | |||||| |||||| |||||||||| ||| |||| || || || ||||
Sbjct 807628 ACACCTATCACAACGGTGTTGCTGGTCTGCAGAACTATGGCCTGCTCAATGATCCGGCCC 807569
Query 27588 TGCCCGCCAACCTGACCCCTGGCACCAAGGCGGCAGGCGGCACCACCTGGTCCACCGTTG 27647
|| | || |||||||| | ||| ||||| || || ||| |||||| ||| | |
Sbjct 807568 TGTCGGCTCCGCTGACCCCGGCCACGAAGGCAGCGGGTGGCGTGACCTGGATCACGGGCG 807509
Query 27648 CTGGCAAGCCCAACGCAACCGCGCTGGAAGTGCTGGCGGACATCCAGGCCATGTTC 27703
| ||| ||| || || || |||||| | ||||||||||||||||| |||
Sbjct 807508 CCGGCGTCATCAATGCCACGGCCAATGAAGTGTTCGCGGACATCCAGGCCATCTTC 807453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139216700033854
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |