Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq7352 95.1 9e-15 seq8549 84.2 2e-11 >seq7352 Length=278960 Score = 95.1 bits (104), Expect = 9e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 45236 GCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGAA 45295 |||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||| Sbjct 263231 GCGCCCTTAGCTCAGCTGGATAGAGCACTCGCCTTCTAAGCGAGCGGTCGCAGGTTCGAA 263172 Query 45296 TCCTACAGGGCGTGCCA 45312 |||| ||||||| |||| Sbjct 263171 TCCTGCAGGGCGCGCCA 263155 >seq8549 Length=2370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 38217 GGGGAATTAGCTCAGTTGGGAGAGCAGGGTCTTTGCAAGGCTCAGGTCATCGGTTCGAGT 38276 |||| ||||||||| ||||||||| | ||||||||| ||||||||||||||||| Sbjct 2064 GGGGCTTTAGCTCAGCTGGGAGAGCGGTTGCTTTGCAAGCATCAGGTCATCGGTTCGATC 2005 Query 38277 CCGATATTCTCCACCACTT 38295 |||||| ||||||||||| Sbjct 2004 CCGATAAGCTCCACCACTT 1986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356628935319433