Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq9639 188 2e-43 seq10734 187 8e-43 seq7053 185 3e-42 seq9538 145 2e-30 seq6415 141 3e-29 seq9470 98.7 3e-16 >seq9639 Length=103419 Score = 188 bits (208), Expect = 2e-43 Identities = 477/717 (67%), Gaps = 10/717 (1%) Strand=Plus/Minus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 |||||||||| ||| ||||||| || || || || || ||||| || || || || Sbjct 4267 GTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAG 4208 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 ||| |||| || || ||||| |||||||| ||||| | ||||| | ||| Sbjct 4207 AAGGTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAAT 4148 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 || |||| |||||||| || || || |||||||| |||||| || ||||| Sbjct 4147 GTGCGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGC 4088 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGG-GAAAAC 45759 || || ||||| |||| |||| ||||||||| ||| | | ||||| | || Sbjct 4087 GACCTGGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCGGACGGCGGCCAC 4028 Query 45760 GGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819 ||||||| || || | || | ||| | ||||| |||||||| || || || | Sbjct 4027 A-TCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 3969 Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879 | || ||||| ||||||||||| | || | | ||| | | || || || Sbjct 3968 CATCGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGC 3909 Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939 | ||| ||||| ||||| || | ||| | | ||| | | | ||||| | Sbjct 3908 CTTCTTCCAGTTCTACGTGGCCGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGC 3849 Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999 || | || || || | || || |||||||| ||||| |||||| |||| || ||| | Sbjct 3848 GGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGCT 3789 Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059 ||||| ||||||||||| || || ||||| |||| | |||||||||||| ||| | Sbjct 3788 GGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATCTGGACCGGCGGCGACTGCCACAT 3729 Query 46060 GTACAAAAATCATCTGGAACAAG--CGAAACTGCAGCTGACGCGCGAGCC--GCGCCCGC 46115 ||||| || || || | | || ||| || |||||| ||||| |||| |||| | Sbjct 3728 CTACAACAACCA-CTTCACCCAGGTCGAGAC-CCAGCTGGCGCGCCAGCCCTTCGCCTAC 3671 Query 46116 TGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATT 46175 |||| ||| |||||| || ||| || ||||| | ||| || |||||||| | Sbjct 3670 --CCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTCGGCTACGAGTACGAGGACT 3613 Query 46176 TTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | || | |||||||| | | ||| | | || ||||| || || |||| |||| Sbjct 3612 TCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCCCCCGTGGCCGTCTGAG 3556 >seq10734 Length=9239 Score = 187 bits (206), Expect = 8e-43 Identities = 508/769 (66%), Gaps = 14/769 (2%) Strand=Plus/Plus Query 45473 GAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGT 45532 ||| |||||| |||||| ||||| || || || ||||| ||||| ||| | Sbjct 1255 GAACACGGCGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGG 1314 Query 45533 CAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATC 45592 ||| |||| || ||| || || || |||||||| || || || || ||| |||| | Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1374 Query 45593 CGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTG 45652 ||||||||||| | || ||||| ||||| | || ||||| || || | |||| || Sbjct 1375 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1434 Query 45653 CAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCA 45712 |||| || || ||| ||||||||||||||||| || || ||||| |||||||| Sbjct 1435 AAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCG 1494 Query 45713 ATCTACGGCGCGCAATGGCG-GTCGTGGAAAGGGGCTGACG-----GGAAAACGGTCGAC 45766 |||||||| ||| ||||| | || | | ||| || || | | ||||| Sbjct 1495 GTCTACGGCAAGCAGTGGCGCAGCTGGGCCACCGCCTGCCGATGGCGGTGA--GATCGAC 1552 Query 45767 CAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGT 45825 || | ||| | || | | | || ||||||||||||||| | ||||| ||| || | || Sbjct 1553 CAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCGGATTCGCGTCGGCTGGTGGT 1611 Query 45826 GAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTT 45885 ||||| |||||||||| || | | ||| | || || || || || || Sbjct 1612 CAGCGCCTGGAACGTGGGCGAGCTCTCTCAGATGGCGCTGATGCCGTGCCACAACCTGTT 1671 Query 45886 TCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATAC 45945 ||||| ||||| | | | ||| | | ||| | | | ||||| | ||| | Sbjct 1672 CCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACAT 1731 Query 45946 ATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || || ||| ||||||| |||||||| ||||| |||||| |||| || ||||| || || Sbjct 1732 CTTCCTCGGAGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCA 1791 Query 46006 ACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAA 46065 || ||| | || ||||| || | ||| ||||| | || |||| Sbjct 1792 GGCCACCGGCCTGGGCGTGGGCGACTTCGTGCACACGCTGGGCGATGCGCACCTGTATTC 1851 Query 46066 AAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCT 46125 || || | || || ||| ||||||| |||| || |||||| ||||||||| ||| Sbjct 1852 GAACCACTTCGAGCAGGCGCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT 1911 Query 46126 CGTGATCAAA--CGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTT 46183 ||| | || |||| | ||| | | || | || | | ||| || | | Sbjct 1912 -GTGGTTGAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATCCGCATC 1969 Query 46184 GTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | |||||| |||||||||||||| || ||||| || || | || |||| Sbjct 1970 GACGGCTACGACCCGCACCCGGCCATCAAGGCGCCGGTGGCGGTGTGAG 2018 >seq7053 Length=464797 Score = 185 bits (204), Expect = 3e-42 Identities = 383/570 (67%), Gaps = 0/570 (0%) Strand=Plus/Minus Query 45436 TATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGA 45495 ||||||||||||||| || | || | | || | |||| |||| || | ||| Sbjct 70898 TATGAAACAATATCTCGATCTTCTCCGGCATGTCATGGAAACCGGCTCCGACCGCGGAGA 70839 Query 45496 TCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGA 45555 || || || || || || ||||| ||||| ||| ||||||| || | || Sbjct 70838 CCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCCGA 70779 Query 45556 CGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCT 45615 || || ||| | | || || || ||| ||||| | ||||| ||||| ||||| |||| Sbjct 70778 AGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTGCT 70719 Query 45616 CTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTG 45675 ||||| | || |||||||| ||| | |||| | |||| || || || | || || Sbjct 70718 GTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATCTG 70659 Query 45676 GGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTC 45735 |||||| |||||||| || ||||||||||||||||| |||| || ||||| ||||| || Sbjct 70658 GGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTC 70599 Query 45736 GTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAA 45795 ||| | | | ||||| ||||||| || ||| | | ||| | || Sbjct 70598 CTGGCCGGCGCCGGACGGCCGCCATATCGACCAGATCGCGCTTCTGATCGAGGGTCTGAA 70539 Query 45796 GCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGA 45855 | ||||||||| || || || | || ||||||||| ||| | ||| || Sbjct 70538 GACCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGA 70479 Query 45856 AATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTC 45915 |||| |||||| || ||||| | | || ||||| || || | |||| | |||| Sbjct 70478 AATGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTC 70419 Query 45916 ATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAG 45975 ||| | | ||||| |||| ||||| || || || ||||||| |||||||| Sbjct 70418 CTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTC 70359 Query 45976 CTATGCGCTGTTGACACATATGGTTGCCCA 46005 |||||||||| |||||| ||||| || || Sbjct 70358 CTATGCGCTGCTGACACTGATGGTGGCGCA 70329 >seq9538 Length=646221 Score = 145 bits (160), Expect = 2e-30 Identities = 344/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || || |||||| |||||||||||| |||| |||| || | || Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 ||||| |||||| | | || || || || |||| | |||||||| | ||||| Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || |||||| | |||||||| || | ||| || | || | || || || || Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 |||||||||||||| |||| || |||||||||||||| |||| ||| ||| ||||| Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740 Query 45734 TCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCT--TTAAGGAAA 45791 || ||| | || | || || ||||||| || || ||| | |||| Sbjct 486741 TCCTGGCCGGATGCGCATGGCGGCACCATCGACCAGAT--CGAAAATCTGCTCCGCGAAA 486798 Query 45792 TCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGG 45851 || |||| || | || || ||| || | || || ||||| ||| || ||| Sbjct 486799 TCCGCTGCAATCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGG 486858 Query 45852 GGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGT 45911 || |||| | |||| || || || | | || ||||| ||||| || | || ||| Sbjct 486859 AGGCAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTTTCGGACGGACGGC 486918 Query 45912 TGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCG 45971 |||||||| | | |||||||| | || | ||||| || ||||||| ||||||| Sbjct 486919 TGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCG 486978 Query 45972 CTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCA 46005 || |||||||||| | || ||| ||||| || || Sbjct 486979 CTTCCTATGCGCTGCTCAC-CATGATGGTGGCGCA 487012 >seq6415 Length=247467 Score = 141 bits (156), Expect = 3e-29 Identities = 197/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 45464 GACATCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTG 45523 |||||| | || |||||||| || | || || ||||| || ||||| || ||| Sbjct 52939 GACATCCTCGAGAACGGCGTTCAGCGCGGCGACCGCACGGGCACCGGCACGCTGGGCGTG 52998 Query 45524 TTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAG 45583 |||||||| ||| | ||||| | || | || |||||| | |||| | || ||| Sbjct 52999 TTCGGCCGGCAGATCCGCTTCGATCTGGCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAG 53058 Query 45584 TTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTT 45643 |||| | ||||||||||| || ||||| ||||| | || ||||| || || | Sbjct 53059 CTGCACCTGCGCTCGATCATCATCGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATC 53118 Query 45644 CGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGAT 45703 ||| | |||| || || ||| || ||||||||||||||||| |||||||||||| Sbjct 53119 GCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAACGGCGAT 53178 Query 45704 CTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGG 45739 || ||||| |||||||| ||| ||||| |||||| Sbjct 53179 CTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGG 53214 >seq9470 Length=127963 Score = 98.7 bits (108), Expect = 3e-16 Identities = 200/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 45443 CAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACG 45502 || ||||| | | ||||| ||| | | | |||||||| || | || || || Sbjct 53255 CAGTATCTCGGCCTGCTGGCCGACGTGCTGGTCAACGGCGTCCAGCGCGGCGACCGCACC 53196 Query 45503 GGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTC 45562 || || ||||| || || |||||||| ||| ||||||| || || | || || Sbjct 53195 GGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCGCGGGGCTTT 53136 Query 45563 CCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTT 45622 ||||| |||| || || ||| |||| | ||||||||||| || || || ||||| Sbjct 53135 CCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTTCTGTGGTTC 53076 Query 45623 TTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAG 45682 | ||||| || || | || || |||| || || || | || |||||||| Sbjct 53075 CTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATCTGGGACGAA 53016 Query 45683 TGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGG 45739 |||||||| | | ||||| ||||| || |||||||| ||| ||||| |||||| Sbjct 53015 TGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTCGTGG 52959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157722190186126