Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019544.1
Length=49335
Score E
Sequences producing significant alignments: (Bits) Value
seq9639 188 2e-43
seq10734 187 8e-43
seq7053 185 3e-42
seq9538 145 2e-30
seq6415 141 3e-29
seq9470 98.7 3e-16
>seq9639
Length=103419
Score = 188 bits (208), Expect = 2e-43
Identities = 477/717 (67%), Gaps = 10/717 (1%)
Strand=Plus/Minus
Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580
|||||||||| ||| ||||||| || || || || || ||||| || || || ||
Sbjct 4267 GTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAG 4208
Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640
||| |||| || || ||||| |||||||| ||||| | ||||| | |||
Sbjct 4207 AAGGTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAAT 4148
Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700
|| |||| |||||||| || || || |||||||| |||||| || |||||
Sbjct 4147 GTGCGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGC 4088
Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGG-GAAAAC 45759
|| || ||||| |||| |||| ||||||||| ||| | | ||||| | ||
Sbjct 4087 GACCTGGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCGGACGGCGGCCAC 4028
Query 45760 GGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819
||||||| || || | || | ||| | ||||| |||||||| || || || |
Sbjct 4027 A-TCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 3969
Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879
| || ||||| ||||||||||| | || | | ||| | | || || ||
Sbjct 3968 CATCGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGC 3909
Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939
| ||| ||||| ||||| || | ||| | | ||| | | | ||||| |
Sbjct 3908 CTTCTTCCAGTTCTACGTGGCCGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGC 3849
Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999
|| | || || || | || || |||||||| ||||| |||||| |||| || ||| |
Sbjct 3848 GGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGCT 3789
Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059
||||| ||||||||||| || || ||||| |||| | |||||||||||| ||| |
Sbjct 3788 GGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATCTGGACCGGCGGCGACTGCCACAT 3729
Query 46060 GTACAAAAATCATCTGGAACAAG--CGAAACTGCAGCTGACGCGCGAGCC--GCGCCCGC 46115
||||| || || || | | || ||| || |||||| ||||| |||| |||| |
Sbjct 3728 CTACAACAACCA-CTTCACCCAGGTCGAGAC-CCAGCTGGCGCGCCAGCCCTTCGCCTAC 3671
Query 46116 TGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATT 46175
|||| ||| |||||| || ||| || ||||| | ||| || |||||||| |
Sbjct 3670 --CCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTCGGCTACGAGTACGAGGACT 3613
Query 46176 TTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232
| || | |||||||| | | ||| | | || ||||| || || |||| ||||
Sbjct 3612 TCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCCCCCGTGGCCGTCTGAG 3556
>seq10734
Length=9239
Score = 187 bits (206), Expect = 8e-43
Identities = 508/769 (66%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 45473 GAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGT 45532
||| |||||| |||||| ||||| || || || ||||| ||||| ||| |
Sbjct 1255 GAACACGGCGCCGAGAAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGG 1314
Query 45533 CAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATC 45592
||| |||| || ||| || || || |||||||| || || || || ||| |||| |
Sbjct 1315 CAGATGCGTTTCAACCTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1374
Query 45593 CGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTG 45652
||||||||||| | || ||||| ||||| | || ||||| || || | |||| ||
Sbjct 1375 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1434
Query 45653 CAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCA 45712
|||| || || ||| ||||||||||||||||| || || ||||| ||||||||
Sbjct 1435 AAGGACAACCAGGTACGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCG 1494
Query 45713 ATCTACGGCGCGCAATGGCG-GTCGTGGAAAGGGGCTGACG-----GGAAAACGGTCGAC 45766
|||||||| ||| ||||| | || | | ||| || || | | |||||
Sbjct 1495 GTCTACGGCAAGCAGTGGCGCAGCTGGGCCACCGCCTGCCGATGGCGGTGA--GATCGAC 1552
Query 45767 CAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGT 45825
|| | ||| | || | | | || ||||||||||||||| | ||||| ||| || | ||
Sbjct 1553 CAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCGGATTCGCGTCGGCTGGTGGT 1611
Query 45826 GAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTT 45885
||||| |||||||||| || | | ||| | || || || || || ||
Sbjct 1612 CAGCGCCTGGAACGTGGGCGAGCTCTCTCAGATGGCGCTGATGCCGTGCCACAACCTGTT 1671
Query 45886 TCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATAC 45945
||||| ||||| | | | ||| | | ||| | | | ||||| | ||| |
Sbjct 1672 CCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACAT 1731
Query 45946 ATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005
|| || ||| ||||||| |||||||| ||||| |||||| |||| || ||||| || ||
Sbjct 1732 CTTCCTCGGAGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCA 1791
Query 46006 ACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAA 46065
|| ||| | || ||||| || | ||| ||||| | || ||||
Sbjct 1792 GGCCACCGGCCTGGGCGTGGGCGACTTCGTGCACACGCTGGGCGATGCGCACCTGTATTC 1851
Query 46066 AAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCT 46125
|| || | || || ||| ||||||| |||| || |||||| ||||||||| |||
Sbjct 1852 GAACCACTTCGAGCAGGCGCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT 1911
Query 46126 CGTGATCAAA--CGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTT 46183
||| | || |||| | ||| | | || | || | | ||| || | |
Sbjct 1912 -GTGGTTGAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATCCGCATC 1969
Query 46184 GTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232
| |||||| |||||||||||||| || ||||| || || | || ||||
Sbjct 1970 GACGGCTACGACCCGCACCCGGCCATCAAGGCGCCGGTGGCGGTGTGAG 2018
>seq7053
Length=464797
Score = 185 bits (204), Expect = 3e-42
Identities = 383/570 (67%), Gaps = 0/570 (0%)
Strand=Plus/Minus
Query 45436 TATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGA 45495
||||||||||||||| || | || | | || | |||| |||| || | |||
Sbjct 70898 TATGAAACAATATCTCGATCTTCTCCGGCATGTCATGGAAACCGGCTCCGACCGCGGAGA 70839
Query 45496 TCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGA 45555
|| || || || || || ||||| ||||| ||| ||||||| || | ||
Sbjct 70838 CCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCCGA 70779
Query 45556 CGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCT 45615
|| || ||| | | || || || ||| ||||| | ||||| ||||| ||||| ||||
Sbjct 70778 AGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTGCT 70719
Query 45616 CTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTG 45675
||||| | || |||||||| ||| | |||| | |||| || || || | || ||
Sbjct 70718 GTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATCTG 70659
Query 45676 GGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTC 45735
|||||| |||||||| || ||||||||||||||||| |||| || ||||| ||||| ||
Sbjct 70658 GGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTC 70599
Query 45736 GTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAA 45795
||| | | | ||||| ||||||| || ||| | | ||| | ||
Sbjct 70598 CTGGCCGGCGCCGGACGGCCGCCATATCGACCAGATCGCGCTTCTGATCGAGGGTCTGAA 70539
Query 45796 GCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGA 45855
| ||||||||| || || || | || ||||||||| ||| | ||| ||
Sbjct 70538 GACCAACCCGAATTCCCGTCGTCACATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGA 70479
Query 45856 AATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTC 45915
|||| |||||| || ||||| | | || ||||| || || | |||| | ||||
Sbjct 70478 AATGGCGTTGCCGCCCTGTCACTGCCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTC 70419
Query 45916 ATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAG 45975
||| | | ||||| |||| ||||| || || || ||||||| ||||||||
Sbjct 70418 CTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTC 70359
Query 45976 CTATGCGCTGTTGACACATATGGTTGCCCA 46005
|||||||||| |||||| ||||| || ||
Sbjct 70358 CTATGCGCTGCTGACACTGATGGTGGCGCA 70329
>seq9538
Length=646221
Score = 145 bits (160), Expect = 2e-30
Identities = 344/515 (67%), Gaps = 6/515 (1%)
Strand=Plus/Plus
Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553
|| || || || || |||||| |||||||||||| |||| |||| || | ||
Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560
Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613
||||| |||||| | | || || || || |||| | |||||||| | |||||
Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620
Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673
|| |||||| | |||||||| || | ||| || | || | || || || ||
Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680
Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733
|||||||||||||| |||| || |||||||||||||| |||| ||| ||| |||||
Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740
Query 45734 TCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCT--TTAAGGAAA 45791
|| ||| | || | || || ||||||| || || ||| | ||||
Sbjct 486741 TCCTGGCCGGATGCGCATGGCGGCACCATCGACCAGAT--CGAAAATCTGCTCCGCGAAA 486798
Query 45792 TCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGG 45851
|| |||| || | || || ||| || | || || ||||| ||| || |||
Sbjct 486799 TCCGCTGCAATCCTTATTCACGCCGGCTGATCGTCTCGGCATGGAATCCGGCCGAGGTGG 486858
Query 45852 GGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGT 45911
|| |||| | |||| || || || | | || ||||| ||||| || | || |||
Sbjct 486859 AGGCAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTTTCGGACGGACGGC 486918
Query 45912 TGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCG 45971
|||||||| | | |||||||| | || | ||||| || ||||||| |||||||
Sbjct 486919 TGTCATGCCAGCTCTACCAGCGTTCCGCGGACATCTTTCTCGGCGTGCCGTTCAACATCG 486978
Query 45972 CTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCA 46005
|| |||||||||| | || ||| ||||| || ||
Sbjct 486979 CTTCCTATGCGCTGCTCAC-CATGATGGTGGCGCA 487012
>seq6415
Length=247467
Score = 141 bits (156), Expect = 3e-29
Identities = 197/276 (71%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 45464 GACATCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTG 45523
|||||| | || |||||||| || | || || ||||| || ||||| || |||
Sbjct 52939 GACATCCTCGAGAACGGCGTTCAGCGCGGCGACCGCACGGGCACCGGCACGCTGGGCGTG 52998
Query 45524 TTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAG 45583
|||||||| ||| | ||||| | || | || |||||| | |||| | || |||
Sbjct 52999 TTCGGCCGGCAGATCCGCTTCGATCTGGCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAG 53058
Query 45584 TTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTT 45643
|||| | ||||||||||| || ||||| ||||| | || ||||| || || |
Sbjct 53059 CTGCACCTGCGCTCGATCATCATCGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATC 53118
Query 45644 CGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGAT 45703
||| | |||| || || ||| || ||||||||||||||||| ||||||||||||
Sbjct 53119 GCCTACCTCAAGGACAACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAAAACGGCGAT 53178
Query 45704 CTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGG 45739
|| ||||| |||||||| ||| ||||| ||||||
Sbjct 53179 CTTGGCCCGGTCTACGGCAAGCAGTGGCGCTCGTGG 53214
>seq9470
Length=127963
Score = 98.7 bits (108), Expect = 3e-16
Identities = 200/297 (67%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 45443 CAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACG 45502
|| ||||| | | ||||| ||| | | | |||||||| || | || || ||
Sbjct 53255 CAGTATCTCGGCCTGCTGGCCGACGTGCTGGTCAACGGCGTCCAGCGCGGCGACCGCACC 53196
Query 45503 GGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTC 45562
|| || ||||| || || |||||||| ||| ||||||| || || | || ||
Sbjct 53195 GGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCGCGGGGCTTT 53136
Query 45563 CCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTT 45622
||||| |||| || || ||| |||| | ||||||||||| || || || |||||
Sbjct 53135 CCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTTCTGTGGTTC 53076
Query 45623 TTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAG 45682
| ||||| || || | || || |||| || || || | || ||||||||
Sbjct 53075 CTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATCTGGGACGAA 53016
Query 45683 TGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGG 45739
|||||||| | | ||||| ||||| || |||||||| ||| ||||| ||||||
Sbjct 53015 TGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCGCTCGTGG 52959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157722190186126
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