Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq3680 80.6 8e-11 >seq3680 Length=656 Score = 80.6 bits (88), Expect = 8e-11 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 30141 GACCAGTTGTGCCTCGTAACCAAGAACACCGTTAACCAGGTGTGTTTTCTGAGCCACAGC 30200 ||||| || |||||||| || || || ||||| || ||| || ||||| || || | Sbjct 252 GACCAACTGCGCCTCGTAGCCCAGCACGCCGTTCACAAGGAACGTCTTCTGCGCAACGGA 311 Query 30201 GTAAGGGTTCATGCCCCATTGCATAGCCTGCATGACGATAGCCATACAGTCG-GCTGGTT 30259 | |||||||||||||||| ||||| | ||||| | ||| || | |||||| || ||| Sbjct 312 GAAAGGGTTCATGCCCCACTGCATGGACTGCAGGCAGATGGCGAAGCAGTCGCCCTTGTT 371 Query 30260 TCCCTGCAAGGTGTGCCGGTACCGTCACCTGTGAGTCT-GCCATCAGGTTAGCGA 30313 || || ||||| ||| || ||| || || || |||||||||| |||| Sbjct 372 GCCGCGC-AGGTGGTTCGGGACGGTCGTCT-TGCCGCTGGCCATCAGGTCGGCGA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151387323225286