Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019713.1 Length=78751 Score E Sequences producing significant alignments: (Bits) Value seq9676 152 3e-32 >seq9676 Length=343241 Score = 152 bits (168), Expect = 3e-32 Identities = 382/572 (67%), Gaps = 14/572 (2%) Strand=Plus/Plus Query 52899 TAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTACATTC 52958 |||| || ||||| || ||||| | ||| | ||| | || ||| ||||||| || | | Sbjct 84229 TAGTCACCACCCGTAAAAGCTTTTATAAATCGGCTATTGCTGAAATGCTTGGCTATTTGC 84288 Query 52959 GTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCACTTGGGACGCTAACG 53018 |||| ||| | ||| | |||||| ||||| || |||||||||||||| || || | Sbjct 84289 GTGGTTACGATAATGCGGCAGATTTTAGAAAGGCAGGCACCACCACTTGGGATGCCAATG 84348 Query 53019 CCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATGGGGC 53078 ||||| | ||| ||| ||| | || || ||||| ||| | || || || ||| Sbjct 84349 CCAACGACAATCAAGACTGGTTAGCCAATCCATACCGTAAGGGGCAGGATGAC-TGTGGC 84407 Query 53079 -GTGTTTACGGT---GT-GC-AGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTGG 53132 | | |||||| || || || || || | ||||| |||||||| | | | | Sbjct 84408 TTTATCTACGGTAAAGTCGCTAGAAACTTTC-----CCAAGCCTGATGGCGGCAGTATTG 84462 Query 53133 ACCAGCTCAAGAAGATTGTGGATAATCTTACTAACGGTATCGACGACCGTGGGGAGATCC 53192 | || || || ||| | ||| | |||| | || || || | | || || || | Sbjct 84463 ATTTACTGAAAAATATTATTGATGACCTTAGCCAAGGCATTGATAATAGAGGTGAAATTC 84522 Query 53193 TGAACTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGCATGTACAGCC 53252 | | || ||| |||| |||| || || ||||| || || | || || ||||| |||| Sbjct 84523 TCACGTTTTACCACCCCGGCGTATTTCATATGGGCTGTTTAAGGCCTTGTATGTATAGCC 84582 Query 53253 ACCACTTCTCACTGCTAGGAGACACCCTGTATCTCAACAGCACACAACGCTCTTGTGATG 53312 | || |||||| | | || || || || ||| | || || ||||| | |||||||| Sbjct 84583 ATCATTTCTCATTATTGGGCGATACGCTATATTTAAATAGTACACAGAGAAGTTGTGATG 84642 Query 53313 TACCTTTGGGTCTGAACTTCAACATGGTTCAGGTGTACGTGTTCCTAGCGATCATGGCTC 53372 | || | || || |||||||| ||||| || || || | || |||| | |||| | Sbjct 84643 TGCCGCTTGGCCTCAACTTCAATATGGTGCAAGTCTATTTCTTGTTAGCTTTAGTGGCGC 84702 Query 53373 AAATCACCGGGCACAAGA-TGGGCACCGCGCACCACAAGATCGTGAACGCTCATATCTAC 53431 |||||| |||||| || | ||||| || || || | || || || ||||| || Sbjct 84703 AAATCA-CGGGCAAAAAAGCGGGCAAAGCTTTTCATAAACTGGTCAATGCGCATATTTAT 84761 Query 53432 GAAGACCAGATAGATCTCATGCGCGACGTACA 53463 || || ||| ||| || ||||| || || || Sbjct 84762 GAGGATCAGCTAGCACTGATGCGTGATGTGCA 84793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251832172363688