Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019717.1
Length=45366
Score E
Sequences producing significant alignments: (Bits) Value
seq3680 111 5e-20
seq11405 89.7 1e-13
>seq3680
Length=656
Score = 111 bits (122), Expect = 5e-20
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 25568 ACCAGTTGCGCTTCGTATCCCAGGACACCGTTAACCAGGTGCGTCTTTTGCGCCACGGCG 25627
|||| ||||| ||||| ||||| || ||||| || ||| |||||| ||||| |||| |
Sbjct 253 ACCAACTGCGCCTCGTAGCCCAGCACGCCGTTCACAAGGAACGTCTTCTGCGCAACGGAG 312
Query 25628 TAAGGGTTCATACCCCACTGCATCGCCTGCATGATGATGGCCATGCAGTCTGCCGGATTG 25687
|||||||||| ||||||||||| | ||||| | |||||| | |||||| || |||
Sbjct 313 AAAGGGTTCATGCCCCACTGCATGGACTGCAGGCAGATGGCGAAGCAGTCGCCCTTGTTG 372
Query 25688 CCGCGGAGGTG 25698
||||| |||||
Sbjct 373 CCGCGCAGGTG 383
>seq11405
Length=110570
Score = 89.7 bits (98), Expect = 1e-13
Identities = 110/147 (75%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 25595 CCGTTAACCAGGTGCGTCTTTTGCGCCACGGCGTAAGGGTTCATACCCCACTGCATCGCC 25654
||||| |||||||| ||||| || ||||||||| | |||||||| ||||||||||| | |
Sbjct 79955 CCGTTCACCAGGTGGGTCTTCTGGGCCACGGCGAAGGGGTTCATGCCCCACTGCATGGAC 80014
Query 25655 TGCATGATGATGGCCATGCAGTCTGCCGGATTGCCGCGGAGGTGCTCAGGCACCGTTACG 25714
|||| |||||| | |||||| || |||| || ||||| | ||||| || ||
Sbjct 80015 TGCAGCGAGATGGCGAAGCAGTCGCCCTTGCTGCCCCGCAGGTGTTGGGGCACGGT--CG 80072
Query 25715 GC-TGCCTGT-GCCATCAACCCGGCGA 25739
| |||| | ||||||| ||||||
Sbjct 80073 TCTTGCCGCTGGCCATCAGTTCGGCGA 80099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145023661414624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |