Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq3680 111 5e-20 seq11405 89.7 1e-13 >seq3680 Length=656 Score = 111 bits (122), Expect = 5e-20 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 25568 ACCAGTTGCGCTTCGTATCCCAGGACACCGTTAACCAGGTGCGTCTTTTGCGCCACGGCG 25627 |||| ||||| ||||| ||||| || ||||| || ||| |||||| ||||| |||| | Sbjct 253 ACCAACTGCGCCTCGTAGCCCAGCACGCCGTTCACAAGGAACGTCTTCTGCGCAACGGAG 312 Query 25628 TAAGGGTTCATACCCCACTGCATCGCCTGCATGATGATGGCCATGCAGTCTGCCGGATTG 25687 |||||||||| ||||||||||| | ||||| | |||||| | |||||| || ||| Sbjct 313 AAAGGGTTCATGCCCCACTGCATGGACTGCAGGCAGATGGCGAAGCAGTCGCCCTTGTTG 372 Query 25688 CCGCGGAGGTG 25698 ||||| ||||| Sbjct 373 CCGCGCAGGTG 383 >seq11405 Length=110570 Score = 89.7 bits (98), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 25595 CCGTTAACCAGGTGCGTCTTTTGCGCCACGGCGTAAGGGTTCATACCCCACTGCATCGCC 25654 ||||| |||||||| ||||| || ||||||||| | |||||||| ||||||||||| | | Sbjct 79955 CCGTTCACCAGGTGGGTCTTCTGGGCCACGGCGAAGGGGTTCATGCCCCACTGCATGGAC 80014 Query 25655 TGCATGATGATGGCCATGCAGTCTGCCGGATTGCCGCGGAGGTGCTCAGGCACCGTTACG 25714 |||| |||||| | |||||| || |||| || ||||| | ||||| || || Sbjct 80015 TGCAGCGAGATGGCGAAGCAGTCGCCCTTGCTGCCCCGCAGGTGTTGGGGCACGGT--CG 80072 Query 25715 GC-TGCCTGT-GCCATCAACCCGGCGA 25739 | |||| | ||||||| |||||| Sbjct 80073 TCTTGCCGCTGGCCATCAGTTCGGCGA 80099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145023661414624