Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019923.1
Length=42689
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 307 3e-79
seq1205 268 3e-67
>seq9777
Length=39614
Score = 307 bits (340), Expect = 3e-79
Identities = 370/503 (74%), Gaps = 0/503 (0%)
Strand=Plus/Plus
Query 850 TCAGGCCACGGTATCGGCAAATCGGCCTTCATCAGCATGCTCATCGACTGGGCAGAGAGC 909
|| |||||||| |||||||| || || | | ||||| ||| | ||||| |
Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582
Query 910 ACAGCCGTAGACACCCGCGTCGTCGTGACGGCCAACACCGAAACACAGCTGCGCACCAAG 969
|| || |||||| |||| |||||| || ||||||||||| | ||||||||||| |||
Sbjct 25583 ACGTTCGAAGACACGCGCGGCGTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAAG 25642
Query 970 ACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCAGCCTGTTCTCGCACTGGTTCAAGACC 1029
|||||| |||| | | || |||| ||||||| | | ||||| || |
Sbjct 25643 ACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCTCACCAAGGACTGGGCCACGCTG 25702
Query 1030 ACGGCCACATCGATCGTTTCCCTCGACCCCAAACACTCCGCATCCTGGCGCGCCGACGCC 1089
|| ||||| || | | | || ||| ||| | |||||||| ||||||
Sbjct 25703 ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGACGCG 25762
Query 1090 GTGCCATGGTCCGACACCAACACCGAGGCATTCGCCGGCCTGCACAACGAGGGCAAGCGC 1149
||||| ||||| | | |||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 25763 GTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGGCGC 25822
Query 1150 ATCATCCTGATCTTCGATGAGGCTTCGAACATCAGCGACAAGGTGTGGGAAGTGGCTGAG 1209
||| | ||| | ||||| ||||||||| |||| ||||||||||||||||||||| |||
Sbjct 25823 ATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCCGAG 25882
Query 1210 GGTGCGCTGACTGACGAGAACACCGAGATCATATGGGTGGCATTCGGCAACCCGACGCGC 1269
||||||||||| ||| || |||||||||||| |||| || ||||||||| | || |||
Sbjct 25883 GGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACCCGC 25942
Query 1270 AACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCAAGCACCGGTGGAAGTGCAAGCAG 1329
||||| ||||| |||||||||||||||||| ||||||| | | ||| | | |||||
Sbjct 25943 AACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAGCAG 26002
Query 1330 ATCGATGCCAGGACTGTTGAAGG 1352
||||| | | || ||||| ||
Sbjct 26003 ATCGACAGCCGCACCGTTGAGGG 26025
>seq1205
Length=48877
Score = 268 bits (296), Expect = 3e-67
Identities = 377/524 (72%), Gaps = 14/524 (3%)
Strand=Plus/Plus
Query 847 GCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCAGCATGCTCATCGACTGGGCAGAG 906
|| || ||||||||||||||||| |||||| |||| |||| ||| | | |||||
Sbjct 35848 GCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTC 35907
Query 907 AGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCAACACCGAAACACAGCTGCGCACC 966
||| ||| ||||||||| ||||| | || ||||| ||||| ||||||| ||||
Sbjct 35908 GACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACC 35967
Query 967 AAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCAGCCTGTTCTC--GC-ACTGGTTC 1023
||||| |||||||| | || || ||| | |||| || | || | || ||||||||
Sbjct 35968 AAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTC-GC--GGTCACCGGCGACTGGTTC 36024
Query 1024 AAGACCACGGCCACATCGATCGTTTCCCTCGACCC----CAAACACTCCGCATCCTGGCG 1079
||| || ||||| ||||| || |||| | | | || ||||||||
Sbjct 36025 AAGGTCAATGCCACCAGCATCGTGTC----GACCATGGGCGACCGGTCGAAGTCCTGGCG 36080
Query 1080 CGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCATTCGCCGGCCTGCACAACGA 1139
| ||||| || | ||||| | | |||||||||||| |||||||||||||| || |
Sbjct 36081 CACCGACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCA 36140
Query 1140 GGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACATCAGCGACAAGGTGTGGGA 1199
||||||||||||| | ||||||||||| ||||| || ||||| | |||||||||||||
Sbjct 36141 GGGCAAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGA 36200
Query 1200 AGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCATATGGGTGGCATTCGGCAA 1259
|| || || ||||| || |||||| | ||||||||| | ||| | || ||||||||
Sbjct 36201 GGTCGCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAA 36260
Query 1260 CCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCAAGCACCGGTGGAA 1319
|| || | |||||| ||| |||||||| |||| ||||| | | || ||||||
Sbjct 36261 TCCCACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAA 36320
Query 1320 GTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACAAGA 1363
| |||||||||| | | ||| || |||||||||||||
Sbjct 36321 GACGCGGCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGA 36364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136458793306458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |