Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq9777 307 3e-79 seq1205 268 3e-67 >seq9777 Length=39614 Score = 307 bits (340), Expect = 3e-79 Identities = 370/503 (74%), Gaps = 0/503 (0%) Strand=Plus/Plus Query 850 TCAGGCCACGGTATCGGCAAATCGGCCTTCATCAGCATGCTCATCGACTGGGCAGAGAGC 909 || |||||||| |||||||| || || | | ||||| ||| | ||||| | Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582 Query 910 ACAGCCGTAGACACCCGCGTCGTCGTGACGGCCAACACCGAAACACAGCTGCGCACCAAG 969 || || |||||| |||| |||||| || ||||||||||| | ||||||||||| ||| Sbjct 25583 ACGTTCGAAGACACGCGCGGCGTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAAG 25642 Query 970 ACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCAGCCTGTTCTCGCACTGGTTCAAGACC 1029 |||||| |||| | | || |||| ||||||| | | ||||| || | Sbjct 25643 ACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCTCACCAAGGACTGGGCCACGCTG 25702 Query 1030 ACGGCCACATCGATCGTTTCCCTCGACCCCAAACACTCCGCATCCTGGCGCGCCGACGCC 1089 || ||||| || | | | || ||| ||| | |||||||| |||||| Sbjct 25703 ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGACGCG 25762 Query 1090 GTGCCATGGTCCGACACCAACACCGAGGCATTCGCCGGCCTGCACAACGAGGGCAAGCGC 1149 ||||| ||||| | | |||||||||||| ||||| |||||||||||||||||| |||| Sbjct 25763 GTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGGCGC 25822 Query 1150 ATCATCCTGATCTTCGATGAGGCTTCGAACATCAGCGACAAGGTGTGGGAAGTGGCTGAG 1209 ||| | ||| | ||||| ||||||||| |||| ||||||||||||||||||||| ||| Sbjct 25823 ATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCCGAG 25882 Query 1210 GGTGCGCTGACTGACGAGAACACCGAGATCATATGGGTGGCATTCGGCAACCCGACGCGC 1269 ||||||||||| ||| || |||||||||||| |||| || ||||||||| | || ||| Sbjct 25883 GGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACCCGC 25942 Query 1270 AACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCAAGCACCGGTGGAAGTGCAAGCAG 1329 ||||| ||||| |||||||||||||||||| ||||||| | | ||| | | ||||| Sbjct 25943 AACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAGCAG 26002 Query 1330 ATCGATGCCAGGACTGTTGAAGG 1352 ||||| | | || ||||| || Sbjct 26003 ATCGACAGCCGCACCGTTGAGGG 26025 >seq1205 Length=48877 Score = 268 bits (296), Expect = 3e-67 Identities = 377/524 (72%), Gaps = 14/524 (3%) Strand=Plus/Plus Query 847 GCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCAGCATGCTCATCGACTGGGCAGAG 906 || || ||||||||||||||||| |||||| |||| |||| ||| | | ||||| Sbjct 35848 GCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCTC 35907 Query 907 AGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCAACACCGAAACACAGCTGCGCACC 966 ||| ||| ||||||||| ||||| | || ||||| ||||| ||||||| |||| Sbjct 35908 GACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCACC 35967 Query 967 AAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCAGCCTGTTCTC--GC-ACTGGTTC 1023 ||||| |||||||| | || || ||| | |||| || | || | || |||||||| Sbjct 35968 AAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTC-GC--GGTCACCGGCGACTGGTTC 36024 Query 1024 AAGACCACGGCCACATCGATCGTTTCCCTCGACCC----CAAACACTCCGCATCCTGGCG 1079 ||| || ||||| ||||| || |||| | | | || |||||||| Sbjct 36025 AAGGTCAATGCCACCAGCATCGTGTC----GACCATGGGCGACCGGTCGAAGTCCTGGCG 36080 Query 1080 CGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCATTCGCCGGCCTGCACAACGA 1139 | ||||| || | ||||| | | |||||||||||| |||||||||||||| || | Sbjct 36081 CACCGACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCA 36140 Query 1140 GGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACATCAGCGACAAGGTGTGGGA 1199 ||||||||||||| | ||||||||||| ||||| || ||||| | ||||||||||||| Sbjct 36141 GGGCAAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGA 36200 Query 1200 AGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCATATGGGTGGCATTCGGCAA 1259 || || || ||||| || |||||| | ||||||||| | ||| | || |||||||| Sbjct 36201 GGTCGCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAA 36260 Query 1260 CCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCAAGCACCGGTGGAA 1319 || || | |||||| ||| |||||||| |||| ||||| | | || |||||| Sbjct 36261 TCCCACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAA 36320 Query 1320 GTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACAAGA 1363 | |||||||||| | | ||| || ||||||||||||| Sbjct 36321 GACGCGGCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGA 36364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136458793306458