Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019929.1
Length=243050
Score E
Sequences producing significant alignments: (Bits) Value
seq10734 174 2e-38
seq7053 170 3e-37
seq9470 161 2e-34
seq6415 156 7e-33
seq9538 152 8e-32
seq9639 118 2e-21
seq11739 114 2e-20
seq6714 104 4e-17
seq7823 102 1e-16
seq7278 102 1e-16
seq1205 98.7 2e-15
seq9026 96.9 5e-15
>seq10734
Length=9239
Score = 174 bits (192), Expect = 2e-38
Identities = 182/239 (76%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479
|| || || ||||| ||||||| | || ||| || ||||| || |||||
Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335
Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539
|||| |||||||||||||| ||||| ||| | ||||| ||||| |||||||| |||||
Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395
Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599
||||||||||| | |||||| ||||||||| || ||||| |||||| | || | |||
Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455
Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658
||||| || ||||| || || |||| | ||||||||||| ||||| ||||| |||||
Sbjct 1456 TGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCG 1514
>seq7053
Length=464797
Score = 170 bits (188), Expect = 3e-37
Identities = 223/306 (73%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCAC-GAAAAAGCAGA 122421
|||||||||||||| || | || || | || | || ||| ||| | || | |||
Sbjct 70897 ATGAAACAATATCTCGATCTTCTCCGGCATGT-CATGGAAACCGGCTCCGACCGCGGAGA 70839
Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481
||| || |||||||| || | ||| | ||||| || |||||||| ||||| |
Sbjct 70838 CCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCCGA 70779
Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541
|||||| ||| | |||| ||||| ||| | || || ||||||||||||||||| | ||
Sbjct 70778 AGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTGCT 70719
Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601
||||||||| | |||||||||||| ||| ||||| || || ||| ||| |||||
Sbjct 70718 GTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATCTG 70659
Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661
||| |||||||| || || | || ||||||||||||| || ||| ||| ||||||
Sbjct 70658 GGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTC 70599
Query 122662 GTGGCC 122667
|||||
Sbjct 70598 CTGGCC 70593
>seq9470
Length=127963
Score = 161 bits (178), Expect = 2e-34
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479
||||| || ||||| ||||||||| | |||||| || |||||||| ||||||
Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145
Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539
|| || |||||| | || ||||| ||| | ||||| ||||| |||||| ||||||
Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085
Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599
||||||||||| ||||| ||||||||| | ||||| |||||| ||||| |||
Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025
Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658
||||| |||||||| || | || || | ||||| ||||| ||||| ||||| |||||
Sbjct 53024 TGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966
>seq6415
Length=247467
Score = 156 bits (172), Expect = 7e-33
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479
||||| |||||||| ||||| ||| | |||||| || || ||||| || |||
Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028
Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539
|| || |||||| | | || |||| ||| | ||||| ||||| |||||| |||||
Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088
Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599
||||||||||| | |||||| ||||||||| || || || |||||| ||| | |||
Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148
Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658
||||| || ||||| || ||| | || |||| |||||||| ||||| ||||| |||||
Sbjct 53149 TGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCG 53207
>seq9538
Length=646221
Score = 152 bits (168), Expect = 8e-32
Identities = 185/252 (73%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479
||||| || ||||| ||||| | ||| | |||||| || ||||| || || |||
Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560
Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539
| || |||||| || | || ||||| || | ||||| || |||||||| || |||
Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620
Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599
|||||||| || ||||||||||||||| | |||||||| ||| || ||||| |||
Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680
Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659
||||| || ||||| |||| | || ||||||||||||| || || ||||| |||||
Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740
Query 122660 GAGTGGCCAGAT 122671
||||| |||
Sbjct 486741 TCCTGGCCGGAT 486752
>seq9639
Length=103419
Score = 118 bits (130), Expect = 2e-21
Identities = 175/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479
|||||||| ||||||||||| | | |||||| || |||||||| ||||||
Sbjct 4294 GACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCC 4235
Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539
|||| || ||||||||||| ||||| ||||| |||||| |||||||||| || ||
Sbjct 4234 GAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACTG 4175
Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599
||||||||||| ||||| | ||| | | | ||| | || | | || |||
Sbjct 4174 CTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCATC 4115
Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659
||||| |||||||| || || || | || |||||||| || || |||||||||
Sbjct 4114 TGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCGC 4055
Query 122660 GAGTGGCC 122667
| |||||
Sbjct 4054 AACTGGCC 4047
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 122787 ACATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTA 122846
|||||||||| ||| | | || | | || || || | | ||||||||| |||||| |
Sbjct 4029 ACATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCA 3970
Query 122847 TCATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATG 122906
|||||||||| |||||||||||||| |||||| | |||||| | || ||||| |
Sbjct 3969 TCATCGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACG 3910
Query 122907 CCTTCTTCCAGTTCTAC 122923
|||||||||||||||||
Sbjct 3909 CCTTCTTCCAGTTCTAC 3893
>seq11739
Length=237542
Score = 114 bits (126), Expect = 2e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 122411 GAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTT 122470
|| |||| || ||||| || || || || | || |||| || |||||||| |||
Sbjct 9430 GACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTT 9371
Query 122471 GACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATC 122530
||| || |||||| || ||||| | || || ||||| |||| |||||||||| |
Sbjct 9370 GACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTG 9311
Query 122531 CATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAAC 122590
||| || ||||||||||| | ||||| |||||| | || ||||| |||||||| ||
Sbjct 9310 ATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAA 9251
Query 122591 GTCAGTATCTGGGATGAATGG 122611
|| || ||||||||||||
Sbjct 9250 GTTTCGATTTGGGATGAATGG 9230
>seq6714
Length=1758414
Score = 104 bits (114), Expect = 4e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 530136 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 530194
Query 169792 GTCAGTCCTGCCATTTT 169808
|||| || ||||||||
Sbjct 530195 GTCACTCGCGCCATTTT 530211
>seq7823
Length=199163
Score = 102 bits (112), Expect = 1e-16
Identities = 76/87 (87%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 195853 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 195911
Query 169792 GTCAGTCCTGCCATT---TTTAAATTG 169815
|||| || |||||| |||||| ||
Sbjct 195912 GTCACTCGCGCCATTCTCTTTAAACTG 195938
>seq7278
Length=293576
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 292068 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 292010
Query 169792 GTCAGTCCTGCCATTT 169807
|||| || |||||||
Sbjct 292009 GTCACTCGCGCCATTT 291994
Score = 98.7 bits (108), Expect = 2e-15
Identities = 67/74 (91%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 292184 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 292126
Query 169792 GTCAGTCCTGCCAT 169805
|||| || |||||
Sbjct 292125 GTCACTCGCGCCAT 292112
>seq1205
Length=48877
Score = 98.7 bits (108), Expect = 2e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 17285 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 17227
Query 169792 GTCAGTCCTGCCATTT 169807
|||| || |||| ||
Sbjct 17226 GTCACTCGCGCCACTT 17211
Score = 95.1 bits (104), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||||||| ||||| |||| ||||||||| |||||||||| ||||||||||||
Sbjct 17442 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCTGGTTCGAGCCCC 17384
Query 169792 GTCAGTCCTGCCATTTT 169808
|||| || |||| |||
Sbjct 17383 GTCACTCGCGCCACTTT 17367
>seq9026
Length=54586
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 48358 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 48416
Query 169792 GTCAGTCCTGCCA 169804
|||| || ||||
Sbjct 48417 GTCATTCGCGCCA 48429
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791
||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 48503 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 48561
Query 169792 GTCAGTCCTGCCA 169804
|||| || ||||
Sbjct 48562 GTCATTCGCGCCA 48574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 777485620496400
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