Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq10734 174 2e-38 seq7053 170 3e-37 seq9470 161 2e-34 seq6415 156 7e-33 seq9538 152 8e-32 seq9639 118 2e-21 seq11739 114 2e-20 seq6714 104 4e-17 seq7823 102 1e-16 seq7278 102 1e-16 seq1205 98.7 2e-15 seq9026 96.9 5e-15 >seq10734 Length=9239 Score = 174 bits (192), Expect = 2e-38 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 || || || ||||| ||||||| | || ||| || ||||| || ||||| Sbjct 1276 GATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAACCTGGCC 1335 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 |||| |||||||||||||| ||||| ||| | ||||| ||||| |||||||| ||||| Sbjct 1336 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1395 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | |||||| ||||||||| || ||||| |||||| | || | ||| Sbjct 1396 CTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTACGGATC 1455 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| || || |||| | ||||||||||| ||||| ||||| ||||| Sbjct 1456 TGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCG 1514 >seq7053 Length=464797 Score = 170 bits (188), Expect = 3e-37 Identities = 223/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCAC-GAAAAAGCAGA 122421 |||||||||||||| || | || || | || | || ||| ||| | || | ||| Sbjct 70897 ATGAAACAATATCTCGATCTTCTCCGGCATGT-CATGGAAACCGGCTCCGACCGCGGAGA 70839 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 ||| || |||||||| || | ||| | ||||| || |||||||| ||||| | Sbjct 70838 CCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTTTCCGA 70779 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 |||||| ||| | |||| ||||| ||| | || || ||||||||||||||||| | || Sbjct 70778 AGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATGAATTGCT 70719 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||||||| | |||||||||||| ||| ||||| || || ||| ||| ||||| Sbjct 70718 GTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTTCCATCTG 70659 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 ||| |||||||| || || | || ||||||||||||| || ||| ||| |||||| Sbjct 70658 GGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGTGGCGTTC 70599 Query 122662 GTGGCC 122667 ||||| Sbjct 70598 CTGGCC 70593 >seq9470 Length=127963 Score = 161 bits (178), Expect = 2e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| ||||||||| | |||||| || |||||||| |||||| Sbjct 53204 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGCCGCCAGATGCGCTTCGACCTGGCG 53145 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 || || |||||| | || ||||| ||| | ||||| ||||| |||||| |||||| Sbjct 53144 CGGGGCTTTCCGCTGCTGACCACCAAGAAGCTGCACCTGCGCTCGATCATCGTCGAGCTT 53085 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| ||||| ||||||||| | ||||| |||||| ||||| ||| Sbjct 53084 CTGTGGTTCCTGCGCGGCGAGACCAACATCGCCTGGCTGAAGGACAACGGGGTCAGCATC 53025 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| |||||||| || | || || | ||||| ||||| ||||| ||||| ||||| Sbjct 53024 TGGGACGAATGGGCCGACGCCGAGGGCGAGCTCGGTCCGGTCTACGGCAAGCAGTGGCG 52966 >seq6415 Length=247467 Score = 156 bits (172), Expect = 7e-33 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| |||||||| ||||| ||| | |||||| || || ||||| || ||| Sbjct 52969 GACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTGGCC 53028 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 || || |||||| | | || |||| ||| | ||||| ||||| |||||| ||||| Sbjct 53029 AAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAGCTG 53088 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | |||||| ||||||||| || || || |||||| ||| | ||| Sbjct 53089 CTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGCATC 53148 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| || ||| | || |||| |||||||| ||||| ||||| ||||| Sbjct 53149 TGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCCGGTCTACGGCAAGCAGTGGCG 53207 >seq9538 Length=646221 Score = 152 bits (168), Expect = 8e-32 Identities = 185/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| ||||| | ||| | |||||| || ||||| || || ||| Sbjct 486501 GACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTGGCC 486560 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || |||||| || | || ||||| || | ||||| || |||||||| || ||| Sbjct 486561 GACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAACTT 486620 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 |||||||| || ||||||||||||||| | |||||||| ||| || ||||| ||| Sbjct 486621 CTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACCATC 486680 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 ||||| || ||||| |||| | || ||||||||||||| || || ||||| ||||| Sbjct 486681 TGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGGCAAGCAGTGGCGC 486740 Query 122660 GAGTGGCCAGAT 122671 ||||| ||| Sbjct 486741 TCCTGGCCGGAT 486752 >seq9639 Length=103419 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| ||||||||||| | | |||||| || |||||||| |||||| Sbjct 4294 GACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCC 4235 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 |||| || ||||||||||| ||||| ||||| |||||| |||||||||| || || Sbjct 4234 GAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACTG 4175 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| ||||| | ||| | | | ||| | || | | || ||| Sbjct 4174 CTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCATC 4115 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 ||||| |||||||| || || || | || |||||||| || || ||||||||| Sbjct 4114 TGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCGC 4055 Query 122660 GAGTGGCC 122667 | ||||| Sbjct 4054 AACTGGCC 4047 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 122787 ACATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTA 122846 |||||||||| ||| | | || | | || || || | | ||||||||| |||||| | Sbjct 4029 ACATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCA 3970 Query 122847 TCATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATG 122906 |||||||||| |||||||||||||| |||||| | |||||| | || ||||| | Sbjct 3969 TCATCGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACG 3910 Query 122907 CCTTCTTCCAGTTCTAC 122923 ||||||||||||||||| Sbjct 3909 CCTTCTTCCAGTTCTAC 3893 >seq11739 Length=237542 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 122411 GAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTT 122470 || |||| || ||||| || || || || | || |||| || |||||||| ||| Sbjct 9430 GACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTTGGTCATCAAATGCGTTTT 9371 Query 122471 GACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATC 122530 ||| || |||||| || ||||| | || || ||||| |||| |||||||||| | Sbjct 9370 GACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATTCATTTCCGCTCCATTGTG 9311 Query 122531 CATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAAC 122590 ||| || ||||||||||| | ||||| |||||| | || ||||| |||||||| || Sbjct 9310 ATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAATATCTTAAAGACAATAAA 9251 Query 122591 GTCAGTATCTGGGATGAATGG 122611 || || |||||||||||| Sbjct 9250 GTTTCGATTTGGGATGAATGG 9230 >seq6714 Length=1758414 Score = 104 bits (114), Expect = 4e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 530136 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 530194 Query 169792 GTCAGTCCTGCCATTTT 169808 |||| || |||||||| Sbjct 530195 GTCACTCGCGCCATTTT 530211 >seq7823 Length=199163 Score = 102 bits (112), Expect = 1e-16 Identities = 76/87 (87%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 195853 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 195911 Query 169792 GTCAGTCCTGCCATT---TTTAAATTG 169815 |||| || |||||| |||||| || Sbjct 195912 GTCACTCGCGCCATTCTCTTTAAACTG 195938 >seq7278 Length=293576 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 292068 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 292010 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || ||||||| Sbjct 292009 GTCACTCGCGCCATTT 291994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 292184 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 292126 Query 169792 GTCAGTCCTGCCAT 169805 |||| || ||||| Sbjct 292125 GTCACTCGCGCCAT 292112 >seq1205 Length=48877 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 17285 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 17227 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || |||| || Sbjct 17226 GTCACTCGCGCCACTT 17211 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| |||||||||| |||||||||||| Sbjct 17442 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCTGGTTCGAGCCCC 17384 Query 169792 GTCAGTCCTGCCATTTT 169808 |||| || |||| ||| Sbjct 17383 GTCACTCGCGCCACTTT 17367 >seq9026 Length=54586 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 48358 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 48416 Query 169792 GTCAGTCCTGCCA 169804 |||| || |||| Sbjct 48417 GTCATTCGCGCCA 48429 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 48503 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 48561 Query 169792 GTCAGTCCTGCCA 169804 |||| || |||| Sbjct 48562 GTCATTCGCGCCA 48574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777485620496400