Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_019932.1
Length=29564
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 297 4e-76
seq5906 134 3e-27
>seq7272
Length=98981
Score = 297 bits (328), Expect = 4e-76
Identities = 847/1279 (66%), Gaps = 55/1279 (4%)
Strand=Plus/Plus
Query 10957 CATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGA 11016
||| || || ||||||||||| || || |||| ||||| | ||||||||| ||||||||
Sbjct 41100 CATTCTCAAATCGCGCCAGATCGGGGCAACGTGGTACTTCGGCCGCGAGGCCCTGATTGA 41159
Query 11017 CGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGCGCACGT 11076
|| |||| || || ||||| ||||| ||| | ||||||||| |||||||| || ||
Sbjct 41160 TGCCCTGAAGACGGGCCGCAATCAGATTTTTCTTTCGGCCAGCCGTGCGCAGGCCCATGT 41219
Query 11077 CTTTAAAAACTACATCATTGACTTTGCCCGCCAG--GTG-GACGTTGACCTGAAGGGCGA 11133
|| | |||||||| | |||||| || || || | || ||||||||||
Sbjct 41220 TTTCCGGCAGTACATCATCGCGTTTGCCAAGGAGCATTGCGATATCGATTTGAAGGGCGA 41279
Query 11134 CCCGATTGTGCTGCCGAACGGTGCCCGCCTGATTTTTCTTGGCACCAACGTGCGCACCGC 11193
||| || || ||| || || ||| ||| ||| || ||||| | || ||||||||
Sbjct 41280 CCCCATCGTCCTGAGCAATGGCGCCACGCTGTATTTCCTGGGCACGAGCGCCCGCACCGC 41339
Query 11194 GCAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGATACCGAAATTCCAGGA 11253
|||| ||| |||||| || ||| ||||||||| || ||| | || ||| |||
Sbjct 41340 GCAGTCGTACCACGGCAATCTCTATTTCGATGAATTCTTTTGGGTCAACAACTTCACGGA 41399
Query 11254 GCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTTC 11313
|||| | ||||| |||||||| ||| | | || || | ||||||| || |||||
Sbjct 41400 GCTGTGGAAGGTGGCCAGCGGTATGGCCATCCACAAGCATTGGCGCAAGACGCTGTTTTC 41459
Query 11314 CACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACAA 11373
|||||| |||||| |||| || ||| || | ||| | ||| | |||||||
Sbjct 41460 CACGCCCAGCAGCCTGCAGCACCAGGCCTATGCGCTGTGGAGCGCCGAACGCATCAACAA 41519
Query 11374 AGGGCGGCGCAGCAAAGCCGATCGCATCGAAATCGACCTGTCGCATACGCACCTGGCAAA 11433
| |||| |||| || ||||| || | |||||| ||| ||||||||||
Sbjct 41520 ---GAAGCGCGCCAAAAAGGACCGCATAGAGCTGGACCTGAGCCATTCGCACCTGGCTGG 41576
Query 11434 AGGCGCGCTGTGCGGTGACGGCCAG---TGGCGGCAGATTGTGACGGTTGAGGATGCGCT 11490
|||| | ||| || | | || |||||||||||||| ||||| ||||||||
Sbjct 41577 AGGC---TTCACCGGCGAGGACAAGATATGGCGGCAGATTGTCACGGTGCTGGATGCGCA 41633
Query 11491 GACCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATA-CAGCCCGTCGG 11549
| ||||||||| || ||||| ||||| ||| | || | | || || | || ||
Sbjct 41634 GCGCGGCGGCTGCAATCTGTTCGACCTTGACGAACTGCGCTTCGAGTATTCGGACG-AGG 41692
Query 11550 AATACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGC---GTGTTCCCGT 11606
||| | |||||||| ||||| | |||||| |||||| | | || ||||||
Sbjct 41693 AATGGGACAACCTGCTCATGTGCGGGTTTGT---CGATGACACCTTCGCTGTTTTCCCGC 41749
Query 11607 TCGCCGAGCTGCAGACCTG-CATGATCGACAGCCTGGAGGAATGGAGCGACTTTAACCCG 11665
| || |||| | ||| |||| |||||| ||| | |||||||| || || ||
Sbjct 41750 TGTCCACGCTGATGCGCTGCCATG-CGGACAGCTGGGATGCGTGGAGCGATTTCAAGCCC 41808
Query 11666 TACCTGCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCGTCGCACACC 11725
| | | ||| ||||||| | || |||||||||||||| ||||| || ||
Sbjct 41809 TTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTGGATTGGCTATGACCCCAGCCATACG 41868
Query 11726 GGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGC 11785
|||||| || ||| || || | || ||||| ||||||||||||| |||
Sbjct 41869 GGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGCCAGAAAAGCCGGGCGGCAAGTTCCGC 41928
Query 11786 GTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGGCAAAATCCATTGAG 11845
|||||||||| |||| ||| |||||||| |||||||| || |||
Sbjct 41929 ATGCTGGAGCGCATGCAGTTCAAGGGAGCGGACTTTGAAGCGCAGGCCGAAGTCATCCGC 41988
Query 11846 GACTTAACGAAAAAATACACCGTCGAGTATATCGGCGTGGATGCGACCGGCATCGGCCAG 11905
| | || | ||||||| ||| | | ||| || | ||| | || || | ||||||
Sbjct 41989 CAGATGACAGAGAAATACAACGTGGCACACATCTGCATTGATTCCACAGGTCTGGGCCAG 42048
Query 11906 GGCGTTTTCCAGCTGGTTCGCCAGTTCTACCCGGCGGCGCGTGAAATC----CGTTACTC 11961
||||| | ||| | || |||||| |||||| ||||| || | |||
Sbjct 42049 GGCGTCCTGCAGATCGTGAAAAAGTTCTTCCCGGC----TGTGAAGTCATTGCAGTACAG 42104
Query 11962 GCCGGAAGTGAAAAC-CGCGATGGTGCTGAAGGC-AAAAGACACCATCAGC-AG-CGGAC 12017
||| || ||||| ||| ||||| ||||||| |||| || | || || ||| |
Sbjct 42105 CGTGGAGGTCAAAACGCGC-CTGGTGATGAAGGCGCAAAG---CCTTATGCGAGCCGGCC 42160
Query 12018 GCCTGGAATACGATGCGGGCCA----GACCGACATTACGCAGTCTTTTATGGC---AATC 12070
|| | || | |||| | ||| | |||| || ||||| ||||||||| |
Sbjct 42161 GCTTTGAGTTCGATTCTGGCGACGTGGACCTGCA--GCGCAG--TTTTATGGCCGTGAAG 42216
Query 12071 CGCAAAACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGAC 12130
||| || ||||| | | ||||| || ||||||| |||| |||| | | ||
Sbjct 42217 CGCGAA---ATGACGGGCTCTGGCAAGAGCGTGACCTATGGGGCGGGCCGTGGTGGCGAG 42273
Query 12131 GCCAGCCACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCT---G 12187
| ||||||| || | |||||||| |||| | || || ||||| ||||| |
Sbjct 42274 ACAGGCCACGCGGATCTGGCCTGGGCCTGCATGAATGCGATGGACAACGAGCCGCTGGAG 42333
Query 12188 ACCGCCGCCAGCGGCGGCG 12206
||| |||| |||||||
Sbjct 42334 GCCGTCGCCGTGGGCGGCG 42352
Score = 188 bits (208), Expect = 1e-43
Identities = 330/477 (69%), Gaps = 4/477 (1%)
Strand=Plus/Plus
Query 12704 CGTTCGCCGCTGGCAGCGTCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACG 12763
|||| ||| |||||| | | |||| || | |||| ||| | ||||||| | || |
Sbjct 42826 CGTTTCCCGAAGGCAGCATTTGCCACATCCTCCAGCCCGATGTGCACCAGGAAATCTATG 42885
Query 12764 GCCTGCCGGAATATCTCAGCGCGTTAAACTCTGCCTGGCTGAATGAAGCGGCCACGCTGT 12823
| |||||| | || || |||| | | || |||||||| ||||| ||||||||||||
Sbjct 42886 GACTGCCGCAGTACCTGGCCGCGCTGCAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGT 42945
Query 12824 TTCGCCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACG 12883
|||| ||| |||||| | || || || || || |||||||| ||| ||| |||
Sbjct 42946 TTCGGCGCCGGTATTACAACAATGGGAGCCATGCCGGATACATCCTCTATCTGAGCGATC 43005
Query 12884 CGGCGCAGAG-CAGCAG-CGATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGG 12941
| || || | || || |||| | || | |||||||||| || | || ||
Sbjct 43006 C--CGAAGTGGCAAAAGACGATGTGGATGCGCTGCGCCAGGCCTTGAAATCTTCCAAGGG 43063
Query 12942 CCTGGGTAACTTCCGCAATCTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAA 13001
| |||| || ||||||||||||||| | | |||| |||||| | | | || |
Sbjct 43064 CATGGGCAATTTCCGCAATCTGTTTTTCCATTCGCCCGGCGGCAAAGAGAAAGCCATCCA 43123
Query 13002 GATCCTGCCGCTCAGCGAGGTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAG 13061
| ||||| || |||||| |||| | || ||||| || || |||||||| || | ||
Sbjct 43124 ACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAATTTTTCAACATCAAGAACGTGAG 43183
Query 13062 CCGTGACGACCTGCTGAGCGCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGA 13121
||| || |||| || ||| ||||||||||| ||||| | ||||| | | ||||
Sbjct 43184 CCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGCAGCTCATGGGCGTGGTGCCGGC 43243
Query 13122 CGGTGCAGGCGGCTTTGGCGATTCGGTGAAGGCGGCACAGGTGTTTGTCCGCAATGA 13178
| |||||| ||||| |||||| ||| || || |||| |||||| | ||||| ||
Sbjct 43244 CAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCACGGGTGTTCGCGCGCAACGA 43300
Score = 183 bits (202), Expect = 6e-42
Identities = 559/845 (66%), Gaps = 42/845 (5%)
Strand=Plus/Plus
Query 25829 GGCGAAGTTCGCC-AGGTAGCTGTCGGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCG 25887
|||||||| |||| | |||| |||||||||||||||||| | || ||||||||||
Sbjct 24776 GGCGAAGT-CGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGTCTTCCAGCG 24834
Query 25888 GCGGCACCGGCGTGTAGTCGTAATCAATAAAGAGCTTGCCCGCCTTCAGCGTGTCTTTAT 25947
||||||| |||||||||||||| |||| | |||||||| ||||| |||| ||| |
Sbjct 24835 GCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCGCTTCTGTGG 24894
Query 25948 CGTTGGCCGTGTCGTCATACCA-GCACGACGCGCCCAGCAGGTAACC---GGCGCTGACC 26003
|||| || | ||||| |||| || || | || | || | ||| || ||| ||
Sbjct 24895 TGTTGACCTCGGCGTCAAACCAGGCGCGGC-CGTCGAGGATGTAGCCCAGGGCCTTG--- 24950
Query 26004 AGCTCGCGGAATTTGGCATTGATGCCCGCGATAATGTCGCGCACCAGTACCGGCGT-CAG 26062
|| |||||||| |||||||||||||| | | ||||| ||||| | | || || ||
Sbjct 24951 AGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCA-TGCTGGGGTGCAT 25009
Query 26063 CGGCTTGTCG---TTGGCCCACATATGCGCCTCGGCCATCGTGTCGGCAATCACCTGCGC 26119
||||||||| ||| | ||| |||| ||||| |||||||| | |||||| ||
Sbjct 25010 GGGCTTGTCGACAAAGGC---GAAATGACCCTCTGCCATGGTGTCGGCCAGCACCTGGGC 25066
Query 26120 CGTGCGGGTGTAGTTTTCAAACGCAAACAGCGGATCGTCGCTACAGGTGCGGTTGCCCCA 26179
||||| | | || || ||||| ||| ||| |||||||| |||||
Sbjct 25067 AGTGCGCACGCTGGACTCGAATCGGAACAGTTCGTCGGTGCTGCAGGTGCGCGATCCCCA 25126
Query 26180 GAAGCGGAAGCCATCTTTACGGATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGC 26239
|||||| |||| | | ||| || ||||| ||| |||| |||||||||| ||
Sbjct 25127 GAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAGGTTTGC 25186
Query 26240 GTCGGT-GCCGGTCTGCTGCAAATCCCAGAAGACCGAGGCGGAAATGCCGGT-CACACCG 26297
||| || ||| || |||| || ||| | || ||| | | | |||||
Sbjct 25187 GTCCGTCTCCGAGCT-TTGCAGGTC---GAAATGC---ACGTCCTTGCTGATGCCCACCG 25239
Query 26298 ------TTAACGCCAACGTTGGACAGGGTTTTGTGCCAGCCGGTGTCGGTGTCGATTTTT 26351
||| || | ||||| |||||||| |||||||| || || ||||||
Sbjct 25240 GGCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGG 25298
Query 26352 GCCCGCAGGCCCAGCGCTCGGGCGGTGGCGTACGCGGTTTCGGACTGATTGGCGGTGGTG 26411
|| ||||| |||| ||| ||| || ||| | || || || || ||||||
Sbjct 25299 GCGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGCATTGATGGCCTTGTTTGCCGTGGTG 25358
Query 26412 TTCCAGCTGATAAAGTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTCTCGCGG 26471
|||||| | || || |||||||| ||||| |||||| || ||| || |
Sbjct 25359 TTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCCCTGCA 25418
Query 26472 TATGCCATCGCCTCG--GAAAGGGTTTTGCAGCCCCATG--CCGACACATAGGCGAAGGC 26527
|| |||| |||||| | | || | || || || || ||| ||||| | |||
Sbjct 25419 TACGCCAGGGCCTCGCTCACATCGT----CGGCGCCGTGCCCCTGCACGTAGGCCATGGC 25474
Query 26528 GCGCAGCTGCTGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGG 26587
||||||||| || | | || || || || | | ||| || || ||
Sbjct 25475 GCGCAGCTGGATGGCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGCCCGGG 25534
Query 26588 CACGCCGAGAATGCGCGGTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCAT 26647
|||| || ||||| ||||| ||||| |||||| ||||||| | | |||||||| ||
Sbjct 25535 GGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCCTGAAT 25594
Query 26648 GCCGG 26652
|||||
Sbjct 25595 GCCGG 25599
Score = 100 bits (110), Expect = 5e-17
Identities = 193/279 (69%), Gaps = 12/279 (4%)
Strand=Plus/Plus
Query 8535 TGCCAGTAAATTGACAGGTTATCGAGGCGCGTAATCATCAGGGCATTGGCCGGGAAATAC 8594
|||||||| || |||||||| | || |||| || | |||| || | | ||| |
Sbjct 38610 TGCCAGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCACCGTCGATGAAGAAA 38669
Query 8595 GGCACGCGCACGGCAGGCAGGTTGCCG---ATGCGTTTCTGACTGACAATCAGGTCGGCG 8651
|||||| |||||| | || ||||| | ||| |||| || || | || ||||||
Sbjct 38670 GGCACGGTCACGGC---CTGGCTGCCGCCCAGGCGCATCTGGCTCACCACCATGTCGGCC 38726
Query 8652 GCCAGCTGCTCGGTGTTGGCC--TGGCTCTGGTTCACGATGGGGAAATACTTGTCGGCCA 8709
||||| ||||| || ||| | | | | ||||||||||||||| |||||| ||
Sbjct 38727 GCCAGGCGCTCGCTG--GGCAGATCGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCA 38784
Query 8710 GCAGCTGACGGCCGCAGATCACAACCAGCTCCGGGT-CTTCCTGATACCACGGCTCAATC 8768
||| | | || |||||| | ||| ||||||| ||| | | | ||||| ||||||
Sbjct 38785 TCAGGTCATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATC 38843
Query 8769 AGGGTGTTGGTGGCGTCCATCACCAGTGCGTCAAGGTTC 8807
|| | || |||| ||||| |||| ||||| ||||||
Sbjct 38844 AGCGAGTGCTTGGCATCCATGGCCAGGGCGTCGAGGTTC 38882
>seq5906
Length=1255
Score = 134 bits (148), Expect = 3e-27
Identities = 275/409 (67%), Gaps = 0/409 (0%)
Strand=Plus/Plus
Query 26531 CAGCTGCTGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGGCAC 26590
|||| |||| || | | | | ||||| |||| || || ||| || || || ||
Sbjct 271 CAGCAGCTGCGCCACGACGCCCAGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGT 330
Query 26591 GCCGAGAATGCGCGGTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCATGCC 26650
| |||| || || ||||| || ||||||| |||||| ||||||||||| ||| ||
Sbjct 331 GACGAGGATCTTTGGCTTGACCCCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACC 390
Query 26651 GGTGTAACGGCCATTCTCGTCGGTGGTGCCGATAATGTTCGAGGTGGTTTCCGCCGGGGT 26710
|| | |||| || ||||||| || ||||| | || || |||||||||||
Sbjct 391 TGTCTTTTGGCCGTTGGCGTCGGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATC 450
Query 26711 GGCACCTTCCGCCACGCGCACCACGACGGTGACGGGTTTGGCCTGGTCAGCGATCGCCTG 26770
| | ||||| |||||||| |||||||| ||| || || || || ||||| || |
Sbjct 451 GTCCCCTTCGGCCACGCGGACCACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCG 510
Query 26771 CAGCGCGGCGGCCAGCGTGCCTTTTTTACCGGCTTTGCCAATGGCCGACAGCACGTTGGT 26830
||||| |||||||||||| | | ||||| ||| ||||| | || | |||
Sbjct 511 CAGCGACAGGGCCAGCGTGCCGTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGT 570
Query 26831 CAGCAGCACCGGCTCATTGAGCGGGAAGGCGGCCGCATCGGCATCGTCTGCGGTACAGAC 26890
| ||| |||| || |||||||||| || | ||| || ||| | ||| | |||
Sbjct 571 GATGAGCGCCGGGCGATCGAGCGGGAAGATAGCGGGATCAGCGTCGGCCGCGATGGCGAC 630
Query 26891 CATGCCGACAATGGCCGTGGATACGGTGGAAATGGTGCGCGTGCCGTCG 26939
||| |||| || || ||||| | | || | ||||||| || |||
Sbjct 631 CATACCGATGATCGCGGTGGAAGCAGCGGTCAGCGTGCGCGGCCCATCG 679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 94466303982708
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