Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq7272 297 4e-76 seq5906 134 3e-27 >seq7272 Length=98981 Score = 297 bits (328), Expect = 4e-76 Identities = 847/1279 (66%), Gaps = 55/1279 (4%) Strand=Plus/Plus Query 10957 CATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGA 11016 ||| || || ||||||||||| || || |||| ||||| | ||||||||| |||||||| Sbjct 41100 CATTCTCAAATCGCGCCAGATCGGGGCAACGTGGTACTTCGGCCGCGAGGCCCTGATTGA 41159 Query 11017 CGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGCGCACGT 11076 || |||| || || ||||| ||||| ||| | ||||||||| |||||||| || || Sbjct 41160 TGCCCTGAAGACGGGCCGCAATCAGATTTTTCTTTCGGCCAGCCGTGCGCAGGCCCATGT 41219 Query 11077 CTTTAAAAACTACATCATTGACTTTGCCCGCCAG--GTG-GACGTTGACCTGAAGGGCGA 11133 || | |||||||| | |||||| || || || | || |||||||||| Sbjct 41220 TTTCCGGCAGTACATCATCGCGTTTGCCAAGGAGCATTGCGATATCGATTTGAAGGGCGA 41279 Query 11134 CCCGATTGTGCTGCCGAACGGTGCCCGCCTGATTTTTCTTGGCACCAACGTGCGCACCGC 11193 ||| || || ||| || || ||| ||| ||| || ||||| | || |||||||| Sbjct 41280 CCCCATCGTCCTGAGCAATGGCGCCACGCTGTATTTCCTGGGCACGAGCGCCCGCACCGC 41339 Query 11194 GCAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGATACCGAAATTCCAGGA 11253 |||| ||| |||||| || ||| ||||||||| || ||| | || ||| ||| Sbjct 41340 GCAGTCGTACCACGGCAATCTCTATTTCGATGAATTCTTTTGGGTCAACAACTTCACGGA 41399 Query 11254 GCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTTC 11313 |||| | ||||| |||||||| ||| | | || || | ||||||| || ||||| Sbjct 41400 GCTGTGGAAGGTGGCCAGCGGTATGGCCATCCACAAGCATTGGCGCAAGACGCTGTTTTC 41459 Query 11314 CACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACAA 11373 |||||| |||||| |||| || ||| || | ||| | ||| | ||||||| Sbjct 41460 CACGCCCAGCAGCCTGCAGCACCAGGCCTATGCGCTGTGGAGCGCCGAACGCATCAACAA 41519 Query 11374 AGGGCGGCGCAGCAAAGCCGATCGCATCGAAATCGACCTGTCGCATACGCACCTGGCAAA 11433 | |||| |||| || ||||| || | |||||| ||| |||||||||| Sbjct 41520 ---GAAGCGCGCCAAAAAGGACCGCATAGAGCTGGACCTGAGCCATTCGCACCTGGCTGG 41576 Query 11434 AGGCGCGCTGTGCGGTGACGGCCAG---TGGCGGCAGATTGTGACGGTTGAGGATGCGCT 11490 |||| | ||| || | | || |||||||||||||| ||||| |||||||| Sbjct 41577 AGGC---TTCACCGGCGAGGACAAGATATGGCGGCAGATTGTCACGGTGCTGGATGCGCA 41633 Query 11491 GACCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATA-CAGCCCGTCGG 11549 | ||||||||| || ||||| ||||| ||| | || | | || || | || || Sbjct 41634 GCGCGGCGGCTGCAATCTGTTCGACCTTGACGAACTGCGCTTCGAGTATTCGGACG-AGG 41692 Query 11550 AATACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGC---GTGTTCCCGT 11606 ||| | |||||||| ||||| | |||||| |||||| | | || |||||| Sbjct 41693 AATGGGACAACCTGCTCATGTGCGGGTTTGT---CGATGACACCTTCGCTGTTTTCCCGC 41749 Query 11607 TCGCCGAGCTGCAGACCTG-CATGATCGACAGCCTGGAGGAATGGAGCGACTTTAACCCG 11665 | || |||| | ||| |||| |||||| ||| | |||||||| || || || Sbjct 41750 TGTCCACGCTGATGCGCTGCCATG-CGGACAGCTGGGATGCGTGGAGCGATTTCAAGCCC 41808 Query 11666 TACCTGCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCGTCGCACACC 11725 | | | ||| ||||||| | || |||||||||||||| ||||| || || Sbjct 41809 TTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTGGATTGGCTATGACCCCAGCCATACG 41868 Query 11726 GGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGC 11785 |||||| || ||| || || | || ||||| ||||||||||||| ||| Sbjct 41869 GGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGCCAGAAAAGCCGGGCGGCAAGTTCCGC 41928 Query 11786 GTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGGCAAAATCCATTGAG 11845 |||||||||| |||| ||| |||||||| |||||||| || ||| Sbjct 41929 ATGCTGGAGCGCATGCAGTTCAAGGGAGCGGACTTTGAAGCGCAGGCCGAAGTCATCCGC 41988 Query 11846 GACTTAACGAAAAAATACACCGTCGAGTATATCGGCGTGGATGCGACCGGCATCGGCCAG 11905 | | || | ||||||| ||| | | ||| || | ||| | || || | |||||| Sbjct 41989 CAGATGACAGAGAAATACAACGTGGCACACATCTGCATTGATTCCACAGGTCTGGGCCAG 42048 Query 11906 GGCGTTTTCCAGCTGGTTCGCCAGTTCTACCCGGCGGCGCGTGAAATC----CGTTACTC 11961 ||||| | ||| | || |||||| |||||| ||||| || | ||| Sbjct 42049 GGCGTCCTGCAGATCGTGAAAAAGTTCTTCCCGGC----TGTGAAGTCATTGCAGTACAG 42104 Query 11962 GCCGGAAGTGAAAAC-CGCGATGGTGCTGAAGGC-AAAAGACACCATCAGC-AG-CGGAC 12017 ||| || ||||| ||| ||||| ||||||| |||| || | || || ||| | Sbjct 42105 CGTGGAGGTCAAAACGCGC-CTGGTGATGAAGGCGCAAAG---CCTTATGCGAGCCGGCC 42160 Query 12018 GCCTGGAATACGATGCGGGCCA----GACCGACATTACGCAGTCTTTTATGGC---AATC 12070 || | || | |||| | ||| | |||| || ||||| ||||||||| | Sbjct 42161 GCTTTGAGTTCGATTCTGGCGACGTGGACCTGCA--GCGCAG--TTTTATGGCCGTGAAG 42216 Query 12071 CGCAAAACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGAC 12130 ||| || ||||| | | ||||| || ||||||| |||| |||| | | || Sbjct 42217 CGCGAA---ATGACGGGCTCTGGCAAGAGCGTGACCTATGGGGCGGGCCGTGGTGGCGAG 42273 Query 12131 GCCAGCCACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCT---G 12187 | ||||||| || | |||||||| |||| | || || ||||| ||||| | Sbjct 42274 ACAGGCCACGCGGATCTGGCCTGGGCCTGCATGAATGCGATGGACAACGAGCCGCTGGAG 42333 Query 12188 ACCGCCGCCAGCGGCGGCG 12206 ||| |||| ||||||| Sbjct 42334 GCCGTCGCCGTGGGCGGCG 42352 Score = 188 bits (208), Expect = 1e-43 Identities = 330/477 (69%), Gaps = 4/477 (1%) Strand=Plus/Plus Query 12704 CGTTCGCCGCTGGCAGCGTCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACG 12763 |||| ||| |||||| | | |||| || | |||| ||| | ||||||| | || | Sbjct 42826 CGTTTCCCGAAGGCAGCATTTGCCACATCCTCCAGCCCGATGTGCACCAGGAAATCTATG 42885 Query 12764 GCCTGCCGGAATATCTCAGCGCGTTAAACTCTGCCTGGCTGAATGAAGCGGCCACGCTGT 12823 | |||||| | || || |||| | | || |||||||| ||||| |||||||||||| Sbjct 42886 GACTGCCGCAGTACCTGGCCGCGCTGCAGTCCGCCTGGCTCAATGAGTCGGCCACGCTGT 42945 Query 12824 TTCGCCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACG 12883 |||| ||| |||||| | || || || || || |||||||| ||| ||| ||| Sbjct 42946 TTCGGCGCCGGTATTACAACAATGGGAGCCATGCCGGATACATCCTCTATCTGAGCGATC 43005 Query 12884 CGGCGCAGAG-CAGCAG-CGATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGG 12941 | || || | || || |||| | || | |||||||||| || | || || Sbjct 43006 C--CGAAGTGGCAAAAGACGATGTGGATGCGCTGCGCCAGGCCTTGAAATCTTCCAAGGG 43063 Query 12942 CCTGGGTAACTTCCGCAATCTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAA 13001 | |||| || ||||||||||||||| | | |||| |||||| | | | || | Sbjct 43064 CATGGGCAATTTCCGCAATCTGTTTTTCCATTCGCCCGGCGGCAAAGAGAAAGCCATCCA 43123 Query 13002 GATCCTGCCGCTCAGCGAGGTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAG 13061 | ||||| || |||||| |||| | || ||||| || || |||||||| || | || Sbjct 43124 ACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAATTTTTCAACATCAAGAACGTGAG 43183 Query 13062 CCGTGACGACCTGCTGAGCGCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGA 13121 ||| || |||| || ||| ||||||||||| ||||| | ||||| | | |||| Sbjct 43184 CCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGCAGCTCATGGGCGTGGTGCCGGC 43243 Query 13122 CGGTGCAGGCGGCTTTGGCGATTCGGTGAAGGCGGCACAGGTGTTTGTCCGCAATGA 13178 | |||||| ||||| |||||| ||| || || |||| |||||| | ||||| || Sbjct 43244 CAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCACGGGTGTTCGCGCGCAACGA 43300 Score = 183 bits (202), Expect = 6e-42 Identities = 559/845 (66%), Gaps = 42/845 (5%) Strand=Plus/Plus Query 25829 GGCGAAGTTCGCC-AGGTAGCTGTCGGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCG 25887 |||||||| |||| | |||| |||||||||||||||||| | || |||||||||| Sbjct 24776 GGCGAAGT-CGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGTCTTCCAGCG 24834 Query 25888 GCGGCACCGGCGTGTAGTCGTAATCAATAAAGAGCTTGCCCGCCTTCAGCGTGTCTTTAT 25947 ||||||| |||||||||||||| |||| | |||||||| ||||| |||| ||| | Sbjct 24835 GCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCGCTTCTGTGG 24894 Query 25948 CGTTGGCCGTGTCGTCATACCA-GCACGACGCGCCCAGCAGGTAACC---GGCGCTGACC 26003 |||| || | ||||| |||| || || | || | || | ||| || ||| || Sbjct 24895 TGTTGACCTCGGCGTCAAACCAGGCGCGGC-CGTCGAGGATGTAGCCCAGGGCCTTG--- 24950 Query 26004 AGCTCGCGGAATTTGGCATTGATGCCCGCGATAATGTCGCGCACCAGTACCGGCGT-CAG 26062 || |||||||| |||||||||||||| | | ||||| ||||| | | || || || Sbjct 24951 AGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCA-TGCTGGGGTGCAT 25009 Query 26063 CGGCTTGTCG---TTGGCCCACATATGCGCCTCGGCCATCGTGTCGGCAATCACCTGCGC 26119 ||||||||| ||| | ||| |||| ||||| |||||||| | |||||| || Sbjct 25010 GGGCTTGTCGACAAAGGC---GAAATGACCCTCTGCCATGGTGTCGGCCAGCACCTGGGC 25066 Query 26120 CGTGCGGGTGTAGTTTTCAAACGCAAACAGCGGATCGTCGCTACAGGTGCGGTTGCCCCA 26179 ||||| | | || || ||||| ||| ||| |||||||| ||||| Sbjct 25067 AGTGCGCACGCTGGACTCGAATCGGAACAGTTCGTCGGTGCTGCAGGTGCGCGATCCCCA 25126 Query 26180 GAAGCGGAAGCCATCTTTACGGATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGC 26239 |||||| |||| | | ||| || ||||| ||| |||| |||||||||| || Sbjct 25127 GAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAGGTTTGC 25186 Query 26240 GTCGGT-GCCGGTCTGCTGCAAATCCCAGAAGACCGAGGCGGAAATGCCGGT-CACACCG 26297 ||| || ||| || |||| || ||| | || ||| | | | ||||| Sbjct 25187 GTCCGTCTCCGAGCT-TTGCAGGTC---GAAATGC---ACGTCCTTGCTGATGCCCACCG 25239 Query 26298 ------TTAACGCCAACGTTGGACAGGGTTTTGTGCCAGCCGGTGTCGGTGTCGATTTTT 26351 ||| || | ||||| |||||||| |||||||| || || |||||| Sbjct 25240 GGCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGG 25298 Query 26352 GCCCGCAGGCCCAGCGCTCGGGCGGTGGCGTACGCGGTTTCGGACTGATTGGCGGTGGTG 26411 || ||||| |||| ||| ||| || ||| | || || || || |||||| Sbjct 25299 GCGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGCATTGATGGCCTTGTTTGCCGTGGTG 25358 Query 26412 TTCCAGCTGATAAAGTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTCTCGCGG 26471 |||||| | || || |||||||| ||||| |||||| || ||| || | Sbjct 25359 TTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCCCTGCA 25418 Query 26472 TATGCCATCGCCTCG--GAAAGGGTTTTGCAGCCCCATG--CCGACACATAGGCGAAGGC 26527 || |||| |||||| | | || | || || || || ||| ||||| | ||| Sbjct 25419 TACGCCAGGGCCTCGCTCACATCGT----CGGCGCCGTGCCCCTGCACGTAGGCCATGGC 25474 Query 26528 GCGCAGCTGCTGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGG 26587 ||||||||| || | | || || || || | | ||| || || || Sbjct 25475 GCGCAGCTGGATGGCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGCCCGGG 25534 Query 26588 CACGCCGAGAATGCGCGGTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCAT 26647 |||| || ||||| ||||| ||||| |||||| ||||||| | | |||||||| || Sbjct 25535 GGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCCTGAAT 25594 Query 26648 GCCGG 26652 ||||| Sbjct 25595 GCCGG 25599 Score = 100 bits (110), Expect = 5e-17 Identities = 193/279 (69%), Gaps = 12/279 (4%) Strand=Plus/Plus Query 8535 TGCCAGTAAATTGACAGGTTATCGAGGCGCGTAATCATCAGGGCATTGGCCGGGAAATAC 8594 |||||||| || |||||||| | || |||| || | |||| || | | ||| | Sbjct 38610 TGCCAGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCACCGTCGATGAAGAAA 38669 Query 8595 GGCACGCGCACGGCAGGCAGGTTGCCG---ATGCGTTTCTGACTGACAATCAGGTCGGCG 8651 |||||| |||||| | || ||||| | ||| |||| || || | || |||||| Sbjct 38670 GGCACGGTCACGGC---CTGGCTGCCGCCCAGGCGCATCTGGCTCACCACCATGTCGGCC 38726 Query 8652 GCCAGCTGCTCGGTGTTGGCC--TGGCTCTGGTTCACGATGGGGAAATACTTGTCGGCCA 8709 ||||| ||||| || ||| | | | | ||||||||||||||| |||||| || Sbjct 38727 GCCAGGCGCTCGCTG--GGCAGATCGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCA 38784 Query 8710 GCAGCTGACGGCCGCAGATCACAACCAGCTCCGGGT-CTTCCTGATACCACGGCTCAATC 8768 ||| | | || |||||| | ||| ||||||| ||| | | | ||||| |||||| Sbjct 38785 TCAGGTCATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATC 38843 Query 8769 AGGGTGTTGGTGGCGTCCATCACCAGTGCGTCAAGGTTC 8807 || | || |||| ||||| |||| ||||| |||||| Sbjct 38844 AGCGAGTGCTTGGCATCCATGGCCAGGGCGTCGAGGTTC 38882 >seq5906 Length=1255 Score = 134 bits (148), Expect = 3e-27 Identities = 275/409 (67%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 26531 CAGCTGCTGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGGCAC 26590 |||| |||| || | | | | ||||| |||| || || ||| || || || || Sbjct 271 CAGCAGCTGCGCCACGACGCCCAGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGT 330 Query 26591 GCCGAGAATGCGCGGTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCATGCC 26650 | |||| || || ||||| || ||||||| |||||| ||||||||||| ||| || Sbjct 331 GACGAGGATCTTTGGCTTGACCCCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACC 390 Query 26651 GGTGTAACGGCCATTCTCGTCGGTGGTGCCGATAATGTTCGAGGTGGTTTCCGCCGGGGT 26710 || | |||| || ||||||| || ||||| | || || ||||||||||| Sbjct 391 TGTCTTTTGGCCGTTGGCGTCGGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATC 450 Query 26711 GGCACCTTCCGCCACGCGCACCACGACGGTGACGGGTTTGGCCTGGTCAGCGATCGCCTG 26770 | | ||||| |||||||| |||||||| ||| || || || || ||||| || | Sbjct 451 GTCCCCTTCGGCCACGCGGACCACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCG 510 Query 26771 CAGCGCGGCGGCCAGCGTGCCTTTTTTACCGGCTTTGCCAATGGCCGACAGCACGTTGGT 26830 ||||| |||||||||||| | | ||||| ||| ||||| | || | ||| Sbjct 511 CAGCGACAGGGCCAGCGTGCCGTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGT 570 Query 26831 CAGCAGCACCGGCTCATTGAGCGGGAAGGCGGCCGCATCGGCATCGTCTGCGGTACAGAC 26890 | ||| |||| || |||||||||| || | ||| || ||| | ||| | ||| Sbjct 571 GATGAGCGCCGGGCGATCGAGCGGGAAGATAGCGGGATCAGCGTCGGCCGCGATGGCGAC 630 Query 26891 CATGCCGACAATGGCCGTGGATACGGTGGAAATGGTGCGCGTGCCGTCG 26939 ||| |||| || || ||||| | | || | ||||||| || ||| Sbjct 631 CATACCGATGATCGCGGTGGAAGCAGCGGTCAGCGTGCGCGGCCCATCG 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94466303982708