Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq9661 109 5e-19
seq9913 84.2 2e-11
>seq9661
Length=148800
Score = 109 bits (120), Expect = 5e-19
Identities = 182/262 (69%), Gaps = 1/262 (0%)
Strand=Plus/Minus
Query 39737 CTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCG 39796
|||| ||||||||||| ||| | |||||||| ||||| | ||| | ||||| ||||
Sbjct 18703 CTCG-GCATGATCCTCGACATAGAGCCAGTCACGCACATTCGAGCCATCTCCATAGACCG 18645
Query 39797 GAATCTCTTTATTCGTCAAGATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGTT 39856
|||| | || | | ||| || ||| | || || |||||||| ||| |
Sbjct 18644 GAATGTTTTCACCTGCCAAAGCTCTGAGGATAACAACGGGTATGAGCTTTTCCGGAAAAT 18585
Query 39857 GATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGGT 39916
| ||||||||| | ||||||||||| ||||| |||| |||||||| | |||||
Sbjct 18584 GGTAAGGCCCATAATTATTGGAGCAATTGGTGATCAGAACAGGCAGGCCATAGGTTTCTC 18525
Query 39917 GCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAGGGG 39976
||| | | |||||||||||||| || ||||| || || || || || |||
Sbjct 18524 CCCAGGATCGGACAAGATGGTCAGAGGCCGCCTTTGATGCCGAATAGGGACTGCGAGGCC 18465
Query 39977 CATAAGCTGTCTCTTCGGTAAA 39998
|||| | |||||||| |||||
Sbjct 18464 CATAGGGCGTCTCTTCCGTAAA 18443
>seq9913
Length=13843
Score = 84.2 bits (92), Expect = 2e-11
Identities = 253/384 (66%), Gaps = 10/384 (3%)
Strand=Plus/Minus
Query 38628 TTTTGAAA--GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGT 38685
|||||||| |||||||| || ||| || || || |||||||| | || || | ||
Sbjct 11748 TTTTGAAACGGCAATTTCCTCGGGGCATGCTATTTTAAATCCTTGGCGCTTTTCTAAGGT 11689
Query 38686 CTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAA 38745
|| |||| || || || | ||||| || | || |||||||| ||||||| | |
Sbjct 11688 TCTTACAAATTCACTTGCCTCAAGGAGACTATCGGGGGTACCTGTGTCGAGCCAAGCATA 11629
Query 38746 TCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTC---TTCTAGGTAGCTGCGATTGAT 38802
|||||| || |||| | |||| | | || |||| ||| || || | | ||||||
Sbjct 11628 TCCTCGGCCCAGAATTGATACTT-TGAGTT--TGTCGCGTTCAAGATAAATTCTATTGAT 11572
Query 38803 ATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAAC 38862
||| || || || || || | ||| ||||| | | | |||| || || ||
Sbjct 11571 ATCTGTAATTTCGTACTCCCCCCTCGCAGAAGGAGACAAGTTGGCTGCAATTTCAACGAC 11512
Query 38863 AGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTT 38922
| ||| || || || | || |||||||| | | ||| | || | ||| ||
Sbjct 11511 GTCGGCATCGTAAAAGTAGAGCCCCGTGACAGCCCAGTTTGACTGCGGCCTGCTAGGCTT 11452
Query 38923 CTCTTCAATAGAAATAGC-TTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAG 38981
|||||||| ||||| || || | | || | | || |||| || ||| |||||||||
Sbjct 11451 TTCTTCAATTGAAATTGCCTTCATG-TTGTTGTCGAACGCAACTACTCCGTATCGTTCAG 11393
Query 38982 GATCTTTCACCAAATACCCGAAAA 39005
|||| || || ||| ||||||
Sbjct 11392 GATCATTAACGTGATATGCGAAAA 11369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472541433235080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |