Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq9661 109 5e-19 seq9913 84.2 2e-11 >seq9661 Length=148800 Score = 109 bits (120), Expect = 5e-19 Identities = 182/262 (69%), Gaps = 1/262 (0%) Strand=Plus/Minus Query 39737 CTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCG 39796 |||| ||||||||||| ||| | |||||||| ||||| | ||| | ||||| |||| Sbjct 18703 CTCG-GCATGATCCTCGACATAGAGCCAGTCACGCACATTCGAGCCATCTCCATAGACCG 18645 Query 39797 GAATCTCTTTATTCGTCAAGATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGTT 39856 |||| | || | | ||| || ||| | || || |||||||| ||| | Sbjct 18644 GAATGTTTTCACCTGCCAAAGCTCTGAGGATAACAACGGGTATGAGCTTTTCCGGAAAAT 18585 Query 39857 GATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGGT 39916 | ||||||||| | ||||||||||| ||||| |||| |||||||| | ||||| Sbjct 18584 GGTAAGGCCCATAATTATTGGAGCAATTGGTGATCAGAACAGGCAGGCCATAGGTTTCTC 18525 Query 39917 GCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAGGGG 39976 ||| | | |||||||||||||| || ||||| || || || || || ||| Sbjct 18524 CCCAGGATCGGACAAGATGGTCAGAGGCCGCCTTTGATGCCGAATAGGGACTGCGAGGCC 18465 Query 39977 CATAAGCTGTCTCTTCGGTAAA 39998 |||| | |||||||| ||||| Sbjct 18464 CATAGGGCGTCTCTTCCGTAAA 18443 >seq9913 Length=13843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 253/384 (66%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 38628 TTTTGAAA--GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGT 38685 |||||||| |||||||| || ||| || || || |||||||| | || || | || Sbjct 11748 TTTTGAAACGGCAATTTCCTCGGGGCATGCTATTTTAAATCCTTGGCGCTTTTCTAAGGT 11689 Query 38686 CTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAA 38745 || |||| || || || | ||||| || | || |||||||| ||||||| | | Sbjct 11688 TCTTACAAATTCACTTGCCTCAAGGAGACTATCGGGGGTACCTGTGTCGAGCCAAGCATA 11629 Query 38746 TCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTC---TTCTAGGTAGCTGCGATTGAT 38802 |||||| || |||| | |||| | | || |||| ||| || || | | |||||| Sbjct 11628 TCCTCGGCCCAGAATTGATACTT-TGAGTT--TGTCGCGTTCAAGATAAATTCTATTGAT 11572 Query 38803 ATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAAC 38862 ||| || || || || || | ||| ||||| | | | |||| || || || Sbjct 11571 ATCTGTAATTTCGTACTCCCCCCTCGCAGAAGGAGACAAGTTGGCTGCAATTTCAACGAC 11512 Query 38863 AGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTT 38922 | ||| || || || | || |||||||| | | ||| | || | ||| || Sbjct 11511 GTCGGCATCGTAAAAGTAGAGCCCCGTGACAGCCCAGTTTGACTGCGGCCTGCTAGGCTT 11452 Query 38923 CTCTTCAATAGAAATAGC-TTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAG 38981 |||||||| ||||| || || | | || | | || |||| || ||| ||||||||| Sbjct 11451 TTCTTCAATTGAAATTGCCTTCATG-TTGTTGTCGAACGCAACTACTCCGTATCGTTCAG 11393 Query 38982 GATCTTTCACCAAATACCCGAAAA 39005 |||| || || ||| |||||| Sbjct 11392 GATCATTAACGTGATATGCGAAAA 11369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472541433235080