Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq7053 96.9 4e-15 >seq7053 Length=464797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 39379 CATCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTG 39438 |||||||||||| |||||||| | | || || ||||| |||| || |||||||| Sbjct 70514 CATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAATGGCGTTGCCGCCCTGTCACTG 70455 Query 39439 TTTCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 39498 | || |||||| ||| | | || || ||||| ||| |||||||| || | Sbjct 70454 CCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGC 70395 Query 39499 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGAC 39549 ||| ||||| | || |||||||||| |||||||||||||| || ||||| Sbjct 70394 CGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGAC 70344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557888564679720