Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5744 129 4e-24
seq7795 104 2e-16
seq504 95.1 8e-14
seq90 87.8 1e-11
seq10398 86.0 4e-11
seq8560 86.0 4e-11
>seq5744
Length=65993
Score = 129 bits (142), Expect = 4e-24
Identities = 169/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706
||| || || | ||| |||| || ||| || |||| ||||||||| |||| |||
Sbjct 14190 AAAAAACTTGCGCCGCAACAGATCTCTGCAGAAATTTTGAAAAAAATGAAAAAAACTGCG 14249
Query 474707 --AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764
|| | ||| | || || |||||| || || || ||||| ||||| || || || |
Sbjct 14250 GAAGAT--TATTTAGGTGAAACAGTAACAGAAGCTGTTATTACAGTTCCTGCTTACTTCA 14307
Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824
||||| | |||||||||||||| |||||||| || | ||||| ||||| | ||| ||
Sbjct 14308 ATGATGCACAACGTCAAGCAACAAAAGATGCTGGTCGTATTGCTGGTCTAGAAGTTAAAC 14367
Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|||| ||||| |||||||| || || |||||||| | ||| | || || ||
Sbjct 14368 GTATCATTAACGAACCAACTGCTGCTGCACTTGCGTTCGGTATGGACAAAAA 14419
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/184 (71%), Gaps = 8/184 (4%)
Strand=Plus/Minus
Query 290839 TGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGA 290898
|| ||| || |||||||| || || || | | || || ||||| ||||| | |
Sbjct 14396 TGCAGCAGCAGTTGGTTCGTTAATGATACGTTTAACTTCTAGACCAGCAATACGACCAGC 14337
Query 290899 ATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCttt 290958
|||| ||||| || ||||| |||||||| || |||||||| ||||||||||||||||
Sbjct 14336 ATCTTTTGTTGCTTGACGTTGTGCATCATTGAAGTAAGCAGGAACTGTAATAACAGCTT- 14278
Query 290959 ttccactttctttttc----aaataattttctgccatttgttttatttcTATAAGTATTT 291014
| || || |||| ||||||| ||| || ||| ||| |||| | | | ||||
Sbjct 14277 ---CTGTTACTGTTTCACCTAAATAATCTTCCGCAGTTTTTTTCATTTTTTTCAAAATTT 14221
Query 291015 GTGC 291018
|||
Sbjct 14220 CTGC 14217
>seq7795
Length=2761246
Score = 104 bits (114), Expect = 2e-16
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
|||||||||| | | || || ||||| ||| || || | ||| | || |||
Sbjct 2521158 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 2521099
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|| |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| ||
Sbjct 2521098 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 2521039
Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||| ||||| |||||| ||||| |||||
Sbjct 2521038 TGGCATTCTCAATGTTTCTGCTGTGGATAA 2521009
Score = 93.3 bits (102), Expect = 3e-13
Identities = 125/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || || || |||||| | ||| | || |||| ||
Sbjct 2523437 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAA 2523378
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| ||||||||||||||||| || || || |||| || ||| ||||| | |||||
Sbjct 2523377 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 2523318
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501
||| ||||||| | || || |||||||| || | |||| ||| |||||
Sbjct 2523317 TGATACTGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCC 2523264
Score = 86.0 bits (94), Expect = 4e-11
Identities = 222/336 (66%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
|| ||| | ||||||||||| ||||||||||| |||| ||||| || || | | |
Sbjct 2522151 CGCCTTCGTACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGT 2522092
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606
|||| ||||||| || | ||||||||| || | |||| |||||| | ||
Sbjct 2522091 ATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGG 2522032
Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666
|||||||| | | |||| | || | || | || || || || ||| ||
Sbjct 2522031 TTTGAAGAATTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTT 2521972
Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726
| ||| | ||||| ||||| || || | ||||| ||||| | || || || |||||
Sbjct 2521971 CGGGATGCCAAACTAGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACC 2521912
Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGA 475785
| || || || || ||||| | || || | || ||||| || | | ||| |
Sbjct 2521911 CGCATCCCCAAGAT-TCAGAAACTTCTCCAGGATTTCTTCAATGGGAAGGAACTGAATAA 2521853
Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821
|| | || |||||||| ||||||||||| || ||
Sbjct 2521852 GAGCATCAACCCTGATGAGGCTGTTGCATACGGTGC 2521817
>seq504
Length=1076656
Score = 95.1 bits (104), Expect = 8e-14
Identities = 115/155 (74%), Gaps = 4/155 (3%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || | ||| || ||||||||||||||||||||
Sbjct 268433 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 268374
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734
|| || ||||| | || || ||| | ||||| || | || | ||||| ||
Sbjct 268373 ATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACG--TCAAGAGTG 268316
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || ||||| |||||||| ||
Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTG 268281
>seq90
Length=1189934
Score = 87.8 bits (96), Expect = 1e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
|| ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || |||||
Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
|||||||| |||| ||||| || | ||||| | | || || ||||| ||
Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963
>seq10398
Length=50767
Score = 86.0 bits (94), Expect = 4e-11
Identities = 115/159 (72%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 474716 CTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCA 474774
||||| | ||||| | || || || || || || || || || || ||||| ||| ||
Sbjct 13987 CTTGGGCGAAGAATTGACCGAAGCCGTCATCACGGTACCGGCTTACTTTAACGATAGCCA 13928
Query 474775 ACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAA 474834
||| |||||||| |||||||| || | ||||||||||| | || |||||| || ||
Sbjct 13927 ACGCCAAGCAACGAAAGATGCTGGCCGTATTGCAGGTCTGGAAGTAAAACGTATCATCAA 13868
Query 474835 TGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873
|| ||||| || || || | || | |||| | |||||
Sbjct 13867 CGAGCCAACCGCTGCTGCGTTAGCATTTGGTTTGGATAA 13829
>seq8560
Length=3069389
Score = 86.0 bits (94), Expect = 4e-11
Identities = 115/155 (74%), Gaps = 4/155 (3%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| | ||||||||||||||| || || | ||| || ||||||||||||||||||||
Sbjct 2390230 ATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTT 2390172
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735
|| || ||||| | ||| |||| || ||||||| | | | | || || || |
Sbjct 2390171 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTT-GAGAGTGA 2390113
Query 480736 TAGTTTTACCGGT-GAGAGTCTTAACGAAAATTTG 480769
| || || || || |||||||| || ||||| ||
Sbjct 2390112 TGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTG 2390078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267533246423732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |