Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5744 129 4e-24 seq7795 104 2e-16 seq504 95.1 8e-14 seq90 87.8 1e-11 seq10398 86.0 4e-11 seq8560 86.0 4e-11 >seq5744 Length=65993 Score = 129 bits (142), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 ||| || || | ||| |||| || ||| || |||| ||||||||| |||| ||| Sbjct 14190 AAAAAACTTGCGCCGCAACAGATCTCTGCAGAAATTTTGAAAAAAATGAAAAAAACTGCG 14249 Query 474707 --AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764 || | ||| | || || |||||| || || || ||||| ||||| || || || | Sbjct 14250 GAAGAT--TATTTAGGTGAAACAGTAACAGAAGCTGTTATTACAGTTCCTGCTTACTTCA 14307 Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824 ||||| | |||||||||||||| |||||||| || | ||||| ||||| | ||| || Sbjct 14308 ATGATGCACAACGTCAAGCAACAAAAGATGCTGGTCGTATTGCTGGTCTAGAAGTTAAAC 14367 Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| |||||||| || || |||||||| | ||| | || || || Sbjct 14368 GTATCATTAACGAACCAACTGCTGCTGCACTTGCGTTCGGTATGGACAAAAA 14419 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 290839 TGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGA 290898 || ||| || |||||||| || || || | | || || ||||| ||||| | | Sbjct 14396 TGCAGCAGCAGTTGGTTCGTTAATGATACGTTTAACTTCTAGACCAGCAATACGACCAGC 14337 Query 290899 ATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCttt 290958 |||| ||||| || ||||| |||||||| || |||||||| |||||||||||||||| Sbjct 14336 ATCTTTTGTTGCTTGACGTTGTGCATCATTGAAGTAAGCAGGAACTGTAATAACAGCTT- 14278 Query 290959 ttccactttctttttc----aaataattttctgccatttgttttatttcTATAAGTATTT 291014 | || || |||| ||||||| ||| || ||| ||| |||| | | | |||| Sbjct 14277 ---CTGTTACTGTTTCACCTAAATAATCTTCCGCAGTTTTTTTCATTTTTTTCAAAATTT 14221 Query 291015 GTGC 291018 ||| Sbjct 14220 CTGC 14217 >seq7795 Length=2761246 Score = 104 bits (114), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||| | | || || ||||| ||| || || | ||| | || ||| Sbjct 2521158 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 2521099 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| || Sbjct 2521098 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 2521039 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| ||||| |||||| ||||| ||||| Sbjct 2521038 TGGCATTCTCAATGTTTCTGCTGTGGATAA 2521009 Score = 93.3 bits (102), Expect = 3e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || || |||||| | ||| | || |||| || Sbjct 2523437 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAA 2523378 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||||||||||||||| || || || |||| || ||| ||||| | ||||| Sbjct 2523377 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 2523318 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 ||| ||||||| | || || |||||||| || | |||| ||| ||||| Sbjct 2523317 TGATACTGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCC 2523264 Score = 86.0 bits (94), Expect = 4e-11 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 || ||| | ||||||||||| ||||||||||| |||| ||||| || || | | | Sbjct 2522151 CGCCTTCGTACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGT 2522092 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 2522091 ATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGG 2522032 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | |||| | || | || | || || || || ||| || Sbjct 2522031 TTTGAAGAATTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTT 2521972 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||| || || | ||||| ||||| | || || || ||||| Sbjct 2521971 CGGGATGCCAAACTAGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACC 2521912 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGA 475785 | || || || || ||||| | || || | || ||||| || | | ||| | Sbjct 2521911 CGCATCCCCAAGAT-TCAGAAACTTCTCCAGGATTTCTTCAATGGGAAGGAACTGAATAA 2521853 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || |||||||| ||||||||||| || || Sbjct 2521852 GAGCATCAACCCTGATGAGGCTGTTGCATACGGTGC 2521817 >seq504 Length=1076656 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 268433 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 268374 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734 || || ||||| | || || ||| | ||||| || | || | ||||| || Sbjct 268373 ATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACG--TCAAGAGTG 268316 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| |||||||| || Sbjct 268315 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTG 268281 >seq90 Length=1189934 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 98075 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 98016 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 98015 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 97963 >seq10398 Length=50767 Score = 86.0 bits (94), Expect = 4e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 474716 CTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCA 474774 ||||| | ||||| | || || || || || || || || || || ||||| ||| || Sbjct 13987 CTTGGGCGAAGAATTGACCGAAGCCGTCATCACGGTACCGGCTTACTTTAACGATAGCCA 13928 Query 474775 ACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAA 474834 ||| |||||||| |||||||| || | ||||||||||| | || |||||| || || Sbjct 13927 ACGCCAAGCAACGAAAGATGCTGGCCGTATTGCAGGTCTGGAAGTAAAACGTATCATCAA 13868 Query 474835 TGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || ||||| || || || | || | |||| | ||||| Sbjct 13867 CGAGCCAACCGCTGCTGCGTTAGCATTTGGTTTGGATAA 13829 >seq8560 Length=3069389 Score = 86.0 bits (94), Expect = 4e-11 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||||||||| || || | ||| || |||||||||||||||||||| Sbjct 2390230 ATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTT 2390172 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 || || ||||| | ||| |||| || ||||||| | | | | || || || | Sbjct 2390171 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTT-GAGAGTGA 2390113 Query 480736 TAGTTTTACCGGT-GAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| || ||||| || Sbjct 2390112 TGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTG 2390078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267533246423732