Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8265 356 3e-93 seq13007 161 1e-34 seq1989 98.7 1e-15 >seq8265 Length=5675935 Score = 356 bits (394), Expect = 3e-93 Identities = 675/986 (68%), Gaps = 13/986 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 2374262 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 2374321 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||| || || || | ||||| ||||| || Sbjct 2374322 AAACAAGTGGTGCACGTGCAACAG---CCAGTTCAAATCACCAGCTCCGAAAACGCACAC 2374378 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| ||| |||||||| | || || || | ||||| ||||| Sbjct 2374379 AGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 2374438 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| |||||||||||||| ||||| |||||||| || |||| || || | Sbjct 2374439 AAAGTACTGCCATTTCACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTTTG 2374498 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 2374499 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 2374557 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| ||||| || | ||| ||||| |||| | ||| || | | | Sbjct 2374558 CATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 2374617 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || || || || || ||||| || || | ||| Sbjct 2374618 GCACGTACTCCACATATTCCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTG 2374677 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 2374678 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 2374736 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| | ||||| ||||| || Sbjct 2374737 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTCTCTCCGTTTCTAGGTTG 2374796 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 2374797 TTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 2374856 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| || ||| || |||||| | Sbjct 2374857 TCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCATCCGGTAGAGGTCCTGC 2374916 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 2374917 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATACACCACGCTCTCCAGCTGA 2374976 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA---CCACCGCCAGAAAGAAC 160826 ||||| |||||||| ||| ||| || || |||| || | | | |||| |||| | Sbjct 2374977 CTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAATAGCTGCAGCCAAAAAGGA- 2375035 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || || | |||| |||||||| || ||||| | ||||||||| ||||||||| Sbjct 2375036 --TTTCTCTGATTTTCTATCCACGTGAACACAATAGAAATTCTGAGGCATATAGATGGCC 2375093 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 2375094 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 2375153 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || || | ||| || ||| || | | | | || || ||| ||||||| ||| || Sbjct 2375154 AATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAA 2375213 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| ||||| Sbjct 2375214 GCACAATCACCAGTCATGTTTATATA 2375239 >seq13007 Length=1899925 Score = 161 bits (178), Expect = 1e-34 Identities = 226/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 1648715 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 1648656 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||| ||||| || || | |||||||| ||| ||| Sbjct 1648655 TAACACGCCTCATCTTCCAAGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCATGAGCCCC 1648596 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 1648595 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 1648536 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 1648535 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 1648476 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 1648475 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 1648416 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 1648415 ACATCCTGGGTCACCAC 1648399 Score = 111 bits (122), Expect = 2e-19 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 1651556 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 1651501 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | ||||| | ||| ||| |||||||| Sbjct 1651500 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCATT 1651441 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || |||||||||||||| || || | || |||||| | || Sbjct 1651440 GGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCCGACCCAGAGACTTTCCAGGAGAT 1651381 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 1651380 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 1651340 >seq1989 Length=1075892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 36470 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 36529 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| ||| |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 36530 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 36589 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 36590 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 36649 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| ||| || || |||| |||||||||||||| | | ||| || | Sbjct 36650 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 36709 Query 176422 TACA 176425 | || Sbjct 36710 TGCA 36713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577110545700840