Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq8265 356 3e-93
seq13007 161 1e-34
seq1989 98.7 1e-15
>seq8265
Length=5675935
Score = 356 bits (394), Expect = 3e-93
Identities = 675/986 (68%), Gaps = 13/986 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || ||
Sbjct 2374262 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 2374321
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| ||| | || ||||| || || || | ||||| ||||| ||
Sbjct 2374322 AAACAAGTGGTGCACGTGCAACAG---CCAGTTCAAATCACCAGCTCCGAAAACGCACAC 2374378
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | ||| |||||| ||| |||||||| | || || || | ||||| |||||
Sbjct 2374379 AGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 2374438
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||||||||| |||||||||||||| ||||| |||||||| || |||| || || |
Sbjct 2374439 AAAGTACTGCCATTTCACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTTTG 2374498
Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350
| | ||| || | | | |||| | |||| || | ||| | |||||||| || | |
Sbjct 2374499 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 2374557
Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410
| || |||||||| ||||| || | ||| ||||| |||| | ||| || | | |
Sbjct 2374558 CATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 2374617
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| |||| || || || | || || || || || ||||| || || | |||
Sbjct 2374618 GCACGTACTCCACATATTCCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTG 2374677
Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529
| | ||| || ||| ||| ||| || |||| | || | ||| ||||| |
Sbjct 2374678 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 2374736
Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589
| | |||| |||||||| | |||| || | |||||| | ||||| ||||| ||
Sbjct 2374737 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTCTCTCCGTTTCTAGGTTG 2374796
Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649
|| | || | | || |||| | |||| || || ||||| || || | |||||
Sbjct 2374797 TTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 2374856
Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709
|| ||||||| | ||||||| ||||||||| || ||| || |||||| |
Sbjct 2374857 TCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCATCCGGTAGAGGTCCTGC 2374916
Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769
||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | |
Sbjct 2374917 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATACACCACGCTCTCCAGCTGA 2374976
Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA---CCACCGCCAGAAAGAAC 160826
||||| |||||||| ||| ||| || || |||| || | | | |||| |||| |
Sbjct 2374977 CTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAATAGCTGCAGCCAAAAAGGA- 2375035
Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886
|| || | |||| |||||||| || ||||| | ||||||||| |||||||||
Sbjct 2375036 --TTTCTCTGATTTTCTATCCACGTGAACACAATAGAAATTCTGAGGCATATAGATGGCC 2375093
Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946
|| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||
Sbjct 2375094 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 2375153
Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006
|| || | ||| || ||| || | | | | || || ||| ||||||| ||| ||
Sbjct 2375154 AATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAA 2375213
Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032
||||||| | |||||||| |||||
Sbjct 2375214 GCACAATCACCAGTCATGTTTATATA 2375239
>seq13007
Length=1899925
Score = 161 bits (178), Expect = 1e-34
Identities = 226/317 (71%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | |||| || ||||| || || || || || || ||||||||| ||
Sbjct 1648715 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 1648656
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || | || || |||| |||||| ||||| || || | |||||||| ||| |||
Sbjct 1648655 TAACACGCCTCATCTTCCAAGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCATGAGCCCC 1648596
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || || || | ||| || |||||||| || |||||||||
Sbjct 1648595 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 1648536
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| |
Sbjct 1648535 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 1648476
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452
|| || | | ||||| || ||||| | ||||| || ||||||||||| |||
Sbjct 1648475 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 1648416
Query 168453 TCATCTTGAGTTACGAC 168469
|||| || || || ||
Sbjct 1648415 ACATCCTGGGTCACCAC 1648399
Score = 111 bits (122), Expect = 2e-19
Identities = 159/221 (72%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941
|||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || ||
Sbjct 1651556 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 1651501
Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001
|| || || ||||| || ||||| | || | ||||| | ||| ||| ||||||||
Sbjct 1651500 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCATT 1651441
Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061
| | ||| | ||| | | || |||||||||||||| || || | || |||||| | ||
Sbjct 1651440 GGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCCGACCCAGAGACTTTCCAGGAGAT 1651381
Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| ||| || || || || | |||||||| || |||||||
Sbjct 1651380 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 1651340
>seq1989
Length=1075892
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||
Sbjct 36470 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 36529
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| ||| |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 36530 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 36589
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || |
Sbjct 36590 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 36649
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| ||| || || |||| |||||||||||||| | | ||| || |
Sbjct 36650 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 36709
Query 176422 TACA 176425
| ||
Sbjct 36710 TGCA 36713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577110545700840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |