Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq13424 95.1 1e-14 seq9673 87.8 2e-12 seq7041 87.8 2e-12 seq9875 84.2 2e-11 seq8280 84.2 2e-11 seq551 84.2 2e-11 seq8424 82.4 8e-11 >seq13424 Length=92847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 ||||| ||||||||| |||||||||| ||||||||||||| | |||||||||||||| Sbjct 91478 CGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA 91419 Query 157750 TCCTGTCACCCCGAC 157764 ||||||| ||||||| Sbjct 91418 TCCTGTCTCCCCGAC 91404 >seq9673 Length=4878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 156614 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673 ||||||||| ||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551 Query 156674 C 156674 | Sbjct 552 C 552 >seq7041 Length=191181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 156672 ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830 >seq9875 Length=154362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 13712 CGCGGATGTAATTCAGTGGTAGAATGTCAGCCTTCCAAGCTGAACGTCAGGGGTTCGAGT 13771 ||||| ||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| | Sbjct 145371 CGCGGGCGTAGTTCAGAGGTAGAACGTCAGCTTCCCAAGCTGAATGTCAGGGGTTCGATT 145430 Query 13772 CCCCTTATCCGCTCCA 13787 ||||| |||||||| Sbjct 145431 CCCCTCGCCCGCTCCA 145446 >seq8280 Length=144189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 |||||| ||||||||| ||||||||| ||||||||||||| |||||||||||| | Sbjct 26466 ACGGGGCGTAGCGCAGTCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAGGTTCAA 26407 Query 157749 ATCCTGTCACCCCGAC 157764 |||||| | ||||||| Sbjct 26406 ATCCTGCCGCCCCGAC 26391 >seq551 Length=68878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 156606 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 156665 ||| | | ||||||||||||||||||||| | ||||||||||| | ||||||||||||| Sbjct 2913 ATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCG 2854 Query 156666 AGTCCTGTC 156674 | ||||||| Sbjct 2853 AATCCTGTC 2845 >seq8424 Length=263062 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 ||| |||||||||||| ||||||||| || ||||||| || ||||||||||||||| Sbjct 49885 CGGAGTGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAA 49826 Query 157750 TCCTGTCACCCCGAC 157764 ||||| ||| ||||| Sbjct 49825 TCCTGCCACTCCGAC 49811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547644093436440