Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq13424 95.1 1e-14
seq9673 87.8 2e-12
seq7041 87.8 2e-12
seq9875 84.2 2e-11
seq8280 84.2 2e-11
seq551 84.2 2e-11
seq8424 82.4 8e-11
>seq13424
Length=92847
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749
||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||
Sbjct 91478 CGGGGAGTAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA 91419
Query 157750 TCCTGTCACCCCGAC 157764
||||||| |||||||
Sbjct 91418 TCCTGTCTCCCCGAC 91404
>seq9673
Length=4878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 156614 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673
||||||||| ||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 492 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 551
Query 156674 C 156674
|
Sbjct 552 C 552
>seq7041
Length=191181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 156672
||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 50773 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 50830
>seq9875
Length=154362
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 13712 CGCGGATGTAATTCAGTGGTAGAATGTCAGCCTTCCAAGCTGAACGTCAGGGGTTCGAGT 13771
||||| ||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| |
Sbjct 145371 CGCGGGCGTAGTTCAGAGGTAGAACGTCAGCTTCCCAAGCTGAATGTCAGGGGTTCGATT 145430
Query 13772 CCCCTTATCCGCTCCA 13787
||||| ||||||||
Sbjct 145431 CCCCTCGCCCGCTCCA 145446
>seq8280
Length=144189
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748
|||||| ||||||||| ||||||||| ||||||||||||| |||||||||||| |
Sbjct 26466 ACGGGGCGTAGCGCAGTCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAGGTTCAA 26407
Query 157749 ATCCTGTCACCCCGAC 157764
|||||| | |||||||
Sbjct 26406 ATCCTGCCGCCCCGAC 26391
>seq551
Length=68878
Score = 84.2 bits (92), Expect = 2e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 156606 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 156665
||| | | ||||||||||||||||||||| | ||||||||||| | |||||||||||||
Sbjct 2913 ATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCG 2854
Query 156666 AGTCCTGTC 156674
| |||||||
Sbjct 2853 AATCCTGTC 2845
>seq8424
Length=263062
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749
||| |||||||||||| ||||||||| || ||||||| || |||||||||||||||
Sbjct 49885 CGGAGTGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAA 49826
Query 157750 TCCTGTCACCCCGAC 157764
||||| ||| |||||
Sbjct 49825 TCCTGCCACTCCGAC 49811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547644093436440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |